Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23915 and PS417_23920 are separated by 224 nucleotidesPS417_23920 and PS417_23925 are separated by 105 nucleotidesPS417_23925 and PS417_23930 are separated by 16 nucleotidesPS417_23930 and PS417_23935 are separated by 57 nucleotides PS417_23915: PS417_23915 - pantoate--beta-alanine ligase, at 5,175,340 to 5,176,191 _23915 PS417_23920: PS417_23920 - glucose-6-phosphate isomerase, at 5,176,416 to 5,178,080 _23920 PS417_23925: PS417_23925 - acetyl-CoA synthetase, at 5,178,186 to 5,180,123 _23925 PS417_23930: PS417_23930 - histidine kinase, at 5,180,140 to 5,181,009 _23930 PS417_23935: PS417_23935 - SAM-dependent methyltransferase, at 5,181,067 to 5,182,083 _23935
Group Condition PS417_23915 PS417_23920 PS417_23925 PS417_23930 PS417_23935
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -5.4 N.D. -0.1 -0.0 -0.1
solid stress 80% Methanol 2 mM; solid stress -5.5 N.D. -0.0 -0.1 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 N.D. -0.2 -0.1 -0.4
carbon source octanoate (C) -5.6 N.D. -0.0 -0.1 +0.2
liquid stress 80% Methanol 1 mM; liquid stress -5.1 N.D. -0.1 -0.1 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.0 N.D. -0.1 -0.3 +0.0
solid stress 80% Methanol 3 mM; solid stress -5.0 N.D. -0.1 +0.1 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 N.D. +0.1 -0.3 -0.2
solid stress 80% Methanol 3 mM; solid stress -5.1 N.D. -0.0 +0.1 -0.0
solid stress Fraxetin 2 mM; solid stress -5.7 N.D. +0.1 +0.5 +0.1
solid stress Scopoletin 0.5 mM; solid stress -4.7 N.D. +0.0 -0.2 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.9 N.D. -0.0 +0.1 -0.2
solid stress Fraxetin 0.5 mM; solid stress -4.7 N.D. +0.0 -0.1 -0.2
solid stress Scopoletin 3 mM; solid stress -5.0 N.D. +0.1 +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.1 N.D. +0.1 -0.0 +0.2
solid stress Scopoletin 2 mM; solid stress -4.9 N.D. -0.1 -0.1 +0.1
solid stress 80% Methanol 0.5 mM; solid stress -4.7 N.D. +0.1 -0.2 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.9 N.D. +0.1 -0.1 +0.3
stress R2A with Fusaric 120 ug/mL -4.6 N.D. +0.0 +0.0 -0.1
solid stress 80% Methanol 3 mM; solid stress -4.8 N.D. -0.0 +0.1 +0.1
liquid stress Scopoletin 1 mM; liquid stress -4.4 N.D. +0.1 -0.2 -0.1
liquid stress Scopoletin 0.5 mM; liquid stress -4.7 N.D. +0.1 +0.2 -0.0
liquid stress 80% Methanol 1 mM; liquid stress -4.6 N.D. +0.1 +0.2 -0.0
carbon source octanoate (C) -4.9 N.D. -0.0 +0.2 +0.3
solid stress Fraxetin 2 mM; solid stress -4.7 N.D. +0.1 +0.3 -0.0
solid stress 80% Methanol 2 mM; solid stress -4.8 N.D. +0.1 +0.6 -0.2
liquid stress Fraxetin 1 mM; liquid stress -4.4 N.D. +0.0 +0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.2 N.D. +0.1 +0.2 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -4.0 N.D. +0.2 +0.6 -0.1
stress Gentamicin 0.008 mg/ml +6.3 N.D. -0.0 -0.1 +0.9
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PS417_23915
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PS417_23920
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PS417_23930
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PS417_23935
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