Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23910 and PS417_23915 overlap by 4 nucleotidesPS417_23915 and PS417_23920 are separated by 224 nucleotidesPS417_23920 and PS417_23925 are separated by 105 nucleotidesPS417_23925 and PS417_23930 are separated by 16 nucleotides PS417_23910: PS417_23910 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 5,174,543 to 5,175,343 _23910 PS417_23915: PS417_23915 - pantoate--beta-alanine ligase, at 5,175,340 to 5,176,191 _23915 PS417_23920: PS417_23920 - glucose-6-phosphate isomerase, at 5,176,416 to 5,178,080 _23920 PS417_23925: PS417_23925 - acetyl-CoA synthetase, at 5,178,186 to 5,180,123 _23925 PS417_23930: PS417_23930 - histidine kinase, at 5,180,140 to 5,181,009 _23930
Group Condition PS417_23910 PS417_23915 PS417_23920 PS417_23925 PS417_23930
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.5 -5.0 N.D. -0.1 -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.4 -4.9 N.D. -0.0 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.1 -4.8 N.D. -0.2 -0.1
carbon source octanoate (C) -4.3 -5.6 N.D. -0.0 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 -4.9 N.D. +0.1 -0.1
carbon source octanoate (C) -4.9 -4.9 N.D. -0.0 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.3 -4.8 N.D. +0.1 -0.3
nophagecontrol TIme6-nophage -3.9 -3.8 N.D. -0.0 -0.1
stress L-Lysine 60 mM -3.8 -3.8 N.D. +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -5.4 N.D. -0.1 -0.0
nophagecontrol TIme6-nophage -3.3 -3.8 N.D. -0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 -5.1 N.D. +0.1 -0.0
solid stress 80% Methanol 2 mM; solid stress -1.1 -5.5 N.D. -0.0 -0.1
stress Choline Lysine 25 mM -2.7 -4.0 N.D. +0.1 +0.2
solid stress 80% Methanol 3 mM; solid stress -1.0 -5.0 N.D. -0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.3 -3.7 N.D. -0.1 +0.2
solid stress Fraxetin 0.5 mM; solid stress -0.9 -4.7 N.D. +0.0 -0.1
liquid stress 80% Methanol 1 mM; liquid stress -0.4 -5.1 N.D. -0.1 -0.1
stress R2A with Fusaric 120 ug/mL -1.1 -4.6 N.D. +0.0 +0.0
solid stress Scopoletin 0.5 mM; solid stress -0.7 -4.7 N.D. +0.0 -0.2
solid stress 80% Methanol 3 mM; solid stress -0.5 -5.1 N.D. -0.0 +0.1
solid stress Fraxetin 2 mM; solid stress -0.5 -5.7 N.D. +0.1 +0.5
stress R2A with Fusaric 120 ug/mL -1.3 -4.4 N.D. +0.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.3 -3.4 N.D. -0.0 +0.3
solid stress 80% Methanol 3 mM; solid stress -0.8 -4.8 N.D. -0.0 +0.1
solid stress Fraxetin 2 mM; solid stress -0.9 -4.7 N.D. +0.1 +0.3
liquid stress 80% Methanol 1 mM; liquid stress -0.6 -4.6 N.D. +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -3.3 N.D. -0.1 +0.4
solid stress 80% Methanol 2 mM; solid stress -0.6 -4.8 N.D. +0.1 +0.6
stress Gentamicin 0.008 mg/ml +3.3 +6.3 N.D. -0.0 -0.1
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PS417_23915
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PS417_23925
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