Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23890 and PS417_23895 are separated by 22 nucleotidesPS417_23895 and PS417_23900 are separated by 697 nucleotidesPS417_23900 and PS417_23905 are separated by 2 nucleotidesPS417_23905 and PS417_23910 are separated by 307 nucleotides PS417_23890: PS417_23890 - ATPase, at 5,167,242 to 5,170,196 _23890 PS417_23895: PS417_23895 - Fis family transcriptional regulator, at 5,170,219 to 5,171,646 _23895 PS417_23900: PS417_23900 - poly(A) polymerase, at 5,172,344 to 5,173,747 _23900 PS417_23905: PS417_23905 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 5,173,750 to 5,174,235 _23905 PS417_23910: PS417_23910 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 5,174,543 to 5,175,343 _23910
Group Condition PS417_23890 PS417_23895 PS417_23900 PS417_23905 PS417_23910
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 N.D. -3.1 N.D. -5.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -1.9 N.D. -5.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.9 N.D. -5.1
carbon source octanoate (C) +1.6 N.D. -3.0 N.D. -4.9
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.9 N.D. -4.3
carbon source octanoate (C) +1.4 N.D. -3.1 N.D. -4.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -1.5 N.D. -4.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. -2.3 N.D. -1.7
carbon source Carbon source L-Citrulline 5 mM -0.8 N.D. -3.5 N.D. -0.3
phage FRSphage -0.0 N.D. -0.8 N.D. -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. -2.1 N.D. -1.8
soil soil sample 8; outgrowth in LB -0.9 N.D. -0.6 N.D. -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. -2.0 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. -2.3 N.D. -0.8
nophagecontrol TIme6-nophage +0.1 N.D. +0.0 N.D. -3.9
soil soil sample 3; outgrowth in LB -1.6 N.D. -0.3 N.D. -1.9
nophagecontrol TIme6-nophage -0.1 N.D. -0.3 N.D. -3.3
no phage control no phage control +0.4 N.D. -0.8 N.D. -3.3
stress methylglyoxal 0.032 vol% +0.8 N.D. -4.7 N.D. +0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.3 N.D. +1.3 N.D. -3.4
stress L-Lysine 60 mM +0.0 N.D. +0.5 N.D. -3.8
soil soil sample 5; outgrowth in LB -2.2 N.D. +0.3 N.D. -1.3
carbon source L-Citrulline (C) +0.8 N.D. -3.5 N.D. +0.1
carbon source m-Inositol (C) +0.7 N.D. -3.1 N.D. -0.2
carbon source m-Inositol (C) +0.8 N.D. -3.2 N.D. +0.0
nitrogen source Adenine (N) +1.2 N.D. -2.9 N.D. -0.0
solid stress Fraxetin 3 mM; solid stress +1.2 N.D. -2.0 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +2.8 N.D. -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. +2.6 N.D. -1.0
stress Gentamicin 0.008 mg/ml +0.5 N.D. -1.4 N.D. +3.3
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