Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23875 and PS417_23880 are separated by 83 nucleotidesPS417_23880 and PS417_23885 are separated by 62 nucleotidesPS417_23885 and PS417_23890 overlap by 17 nucleotidesPS417_23890 and PS417_23895 are separated by 22 nucleotides PS417_23875: PS417_23875 - molecular chaperone DnaK, at 5,165,605 to 5,166,048 _23875 PS417_23880: PS417_23880 - glutamyl-Q tRNA(Asp) ligase, at 5,166,132 to 5,167,019 _23880 PS417_23885: PS417_23885 - MFS transporter, at 5,167,082 to 5,167,258 _23885 PS417_23890: PS417_23890 - ATPase, at 5,167,242 to 5,170,196 _23890 PS417_23895: PS417_23895 - Fis family transcriptional regulator, at 5,170,219 to 5,171,646 _23895
Group Condition PS417_23875 PS417_23880 PS417_23885 PS417_23890 PS417_23895
soil soil sample 5; outgrowth in LB N.D. -0.4 N.D. -2.2 N.D.
soil soil sample 8; outgrowth in LB N.D. -1.0 N.D. -0.9 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.8 N.D. -0.8 N.D.
root root sample 6; outgrowth in LB N.D. -0.1 N.D. -1.5 N.D.
soil soil sample 3; outgrowth in LB N.D. +0.1 N.D. -1.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 N.D. -1.1 N.D.
soil soil sample 6; outgrowth in LB N.D. +0.2 N.D. -1.6 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.0 N.D. -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 N.D. -0.9 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.0 N.D. -1.3 N.D.
carbon source Carbon source L-Citrulline 5 mM N.D. -0.4 N.D. -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 N.D. -0.3 N.D.
soil soil sample 7; outgrowth in LB N.D. +0.1 N.D. -1.1 N.D.
stress Gentamicin 0.008 mg/ml N.D. -1.4 N.D. +0.5 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -1.0 N.D. +0.4 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.9 N.D. +0.5 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -1.0 N.D. +0.9 N.D.
solid stress Fraxetin 2 mM; solid stress N.D. -0.6 N.D. +0.6 N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. -0.5 N.D. +0.7 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.5 N.D. +0.8 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.8 N.D. +1.2 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.7 N.D. +1.2 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.8 N.D. +1.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 N.D. +1.0 N.D.
carbon source Trisodium citrate (C) N.D. -0.3 N.D. +1.2 N.D.
nitrogen source Adenine (N) N.D. -0.2 N.D. +1.2 N.D.
carbon source octanoate (C) N.D. -0.3 N.D. +1.4 N.D.
carbon source octanoate (C) N.D. -0.3 N.D. +1.6 N.D.
carbon source Trisodium citrate (C) N.D. -0.0 N.D. +1.4 N.D.
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