Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23870 and PS417_23875 are separated by 319 nucleotidesPS417_23875 and PS417_23880 are separated by 83 nucleotidesPS417_23880 and PS417_23885 are separated by 62 nucleotidesPS417_23885 and PS417_23890 overlap by 17 nucleotides PS417_23870: PS417_23870 - aminotransferase, at 5,164,113 to 5,165,285 _23870 PS417_23875: PS417_23875 - molecular chaperone DnaK, at 5,165,605 to 5,166,048 _23875 PS417_23880: PS417_23880 - glutamyl-Q tRNA(Asp) ligase, at 5,166,132 to 5,167,019 _23880 PS417_23885: PS417_23885 - MFS transporter, at 5,167,082 to 5,167,258 _23885 PS417_23890: PS417_23890 - ATPase, at 5,167,242 to 5,170,196 _23890
Group Condition PS417_23870 PS417_23875 PS417_23880 PS417_23885 PS417_23890
soil soil sample 5; outgrowth in LB -0.1 N.D. -0.4 N.D. -2.2
soil soil sample 8; outgrowth in LB -0.1 N.D. -1.0 N.D. -0.9
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 N.D. -0.8 N.D. -0.8
soil soil sample 3; outgrowth in LB -0.1 N.D. +0.1 N.D. -1.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. -0.4 N.D. -1.1
soil soil sample 6; outgrowth in LB -0.1 N.D. +0.2 N.D. -1.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. -1.0 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. -0.4 N.D. -0.9
root root sample 6; outgrowth in LB +0.1 N.D. -0.1 N.D. -1.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.0 N.D. +0.0 N.D. -1.4
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 N.D. -0.3 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. -0.2 N.D. -0.8
soil soil sample 7; outgrowth in LB -0.2 N.D. +0.1 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. -0.9 N.D. -0.3
carbon source Carbon source L-Citrulline 5 mM +0.2 N.D. -0.4 N.D. -0.8
liquid stress Fraxetin 3 mM; liquid stress +0.1 N.D. -1.0 N.D. +0.4
stress Gentamicin 0.008 mg/ml +0.4 N.D. -1.4 N.D. +0.5
liquid stress Fraxetin 3 mM; liquid stress +0.2 N.D. -0.9 N.D. +0.5
liquid stress Fraxetin 3 mM; liquid stress +0.0 N.D. -1.0 N.D. +0.9
solid stress Fraxetin 2 mM; solid stress +0.2 N.D. -0.6 N.D. +0.6
solid stress Fraxetin 3 mM; solid stress +0.0 N.D. -0.5 N.D. +0.8
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. -0.8 N.D. +1.2
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. -0.7 N.D. +1.2
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. -0.8 N.D. +1.3
nitrogen source Adenine (N) -0.4 N.D. -0.2 N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 N.D. +0.6 N.D. -0.4
carbon source Trisodium citrate (C) -0.0 N.D. -0.3 N.D. +1.2
carbon source octanoate (C) -0.2 N.D. -0.3 N.D. +1.4
carbon source octanoate (C) -0.0 N.D. -0.3 N.D. +1.6
carbon source Trisodium citrate (C) +0.2 N.D. -0.0 N.D. +1.4
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