Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02365	PS417_02370	PS417_02375	PS417_02380	PS417_02385
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	-0.1	+0.0	N.D.	-3.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	-0.3	+0.2	N.D.	-1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.8	-1.1	N.D.	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.5	-1.8	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	+1.2	+0.0	N.D.	-2.5
supernatant control	Vogels_fungal_media 0.1X	-2.5	-1.0	+0.1	N.D.	+0.8
stress	methylglyoxal 0.032 vol%	+0.4	-0.6	-0.2	N.D.	-2.0
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.5	-0.3	+0.4	N.D.	-2.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-1.7	+0.0	N.D.	-0.9
phage	P. simiae Grant Run MOI 0.1	-0.3	+0.4	+0.0	N.D.	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.3	+0.6	N.D.	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-1.0	+0.7	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.3	+0.4	N.D.	-2.2
soil	soil sample 3; outgrowth in LB	-0.6	-2.0	-0.1	N.D.	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-1.0	-0.0	N.D.	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.5	+0.3	-0.4	N.D.	+1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	-0.4	+0.1	N.D.	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	+0.7	+0.3	N.D.	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	-0.2	-0.0	N.D.	+1.6
phage	JP1 MOI 0.1	-1.2	+0.4	-0.2	N.D.	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.3	-1.1	N.D.	+1.3
solid stress	Scopoletin 0.5 mM; solid stress	-0.9	+0.7	-0.2	N.D.	+1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.6	+0.6	+0.1	N.D.	+2.1
soil	soil sample 6; outgrowth in LB	-0.5	+1.5	-0.2	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+1.2	+0.1	N.D.	+0.9
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.6	+2.0	-0.1	N.D.	+0.3
stress	Neomycin 0.04 mg/ml	+0.0	+0.2	-0.2	N.D.	+3.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+1.8	+0.7	+0.0	N.D.	+0.9
root	root sample 6; outgrowth in LB	+1.5	+3.0	-1.4	N.D.	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	+2.2	+0.5	N.D.	+1.1