Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23775 and PS417_23780 overlap by 4 nucleotidesPS417_23780 and PS417_23785 are separated by 353 nucleotidesPS417_23785 and PS417_23790 overlap by 1 nucleotidesPS417_23790 and PS417_23795 are separated by 63 nucleotides PS417_23775: PS417_23775 - exodeoxyribonuclease V subunit beta, at 5,140,129 to 5,143,803 _23775 PS417_23780: PS417_23780 - exodeoxyribonuclease V subunit gamma, at 5,143,800 to 5,147,252 _23780 PS417_23785: PS417_23785 - sulfite oxidase, at 5,147,606 to 5,148,226 _23785 PS417_23790: PS417_23790 - sulfoxide reductase catalytic subunit YedY, at 5,148,226 to 5,149,239 _23790 PS417_23795: PS417_23795 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 5,149,303 to 5,150,160 _23795
Group Condition PS417_23775 PS417_23780 PS417_23785 PS417_23790 PS417_23795
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.7 N.D. -0.2 -0.2 N.D.
stress Gentamicin 0.008 mg/ml -3.6 N.D. -0.8 -0.8 N.D.
stress Spectinomycin 0.4 mg/ml -4.0 N.D. +0.1 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.1 N.D. +0.1 +0.1 N.D.
motility inner cut, LB soft agar motility assay -3.8 N.D. -0.0 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.0 N.D. -0.3 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.8 N.D. +0.1 +0.3 N.D.
stress methylglyoxal 0.032 vol% -3.9 N.D. +0.3 +0.3 N.D.
carbon source 2-Deoxy-D-Ribose (C) -2.8 N.D. -0.0 -0.4 N.D.
nitrogen source Adenine (N) -2.6 N.D. -0.1 -0.4 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -3.0 N.D. -0.0 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.0 N.D. +0.1 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -3.0 N.D. -0.0 +0.1 N.D.
motility outer cut, LB soft agar motility assay -2.8 N.D. +0.2 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.9 N.D. +0.1 +0.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -2.4 N.D. -0.0 -0.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -2.4 N.D. +0.1 -0.1 N.D.
carbon source L-Isoleucine (C) -2.5 N.D. +0.1 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.4 N.D. -0.1 +0.1 N.D.
motility outer cut, LB soft agar motility assay -2.4 N.D. +0.1 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 N.D. +0.0 +0.2 N.D.
motility inner cut, LB soft agar motility assay -2.4 N.D. +0.1 +0.2 N.D.
phage Wcs_1 -2.7 N.D. +0.0 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 N.D. -0.2 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.3 N.D. +0.1 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.2 N.D. +0.4 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.2 N.D. +0.1 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.2 N.D. +0.4 +0.2 N.D.
phage JP1 MOI 10 +2.3 N.D. -0.3 -0.2 N.D.
phage JP1 MOI 1 +3.1 N.D. +0.0 +0.0 N.D.
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