Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23760	PS417_23765	PS417_23770	PS417_23775	PS417_23780
stress	Gentamicin 0.008 mg/ml	-0.4	-1.3	-3.5	-3.6	N.D.
stress	methylglyoxal 0.032 vol%	+0.3	-1.3	-3.7	-3.9	N.D.
stress	Spectinomycin 0.4 mg/ml	-0.2	-0.0	-4.2	-4.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.0	-2.8	-5.7	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.5	-2.7	-3.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	-2.8	-4.1	N.D.
motility	inner cut, LB soft agar motility assay	+0.5	-0.3	-2.7	-3.8	N.D.
carbon source	2-Deoxy-D-Ribose (C)	-0.2	+0.2	-3.4	-2.8	N.D.
soil	soil sample 3; outgrowth in LB	-0.8	-0.4	-2.9	-2.0	N.D.
ecofab	LB in EcoFAB_3.5mL	-0.9	-0.4	-3.1	-1.3	N.D.
nitrogen source	Adenine (N)	+0.2	-0.4	-2.6	-2.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-0.2	-3.0	-2.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.5	-2.1	-3.8	N.D.
motility	outer cut, LB soft agar motility assay	+0.1	+0.2	-3.0	-2.4	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.6	-0.5	-2.6	-2.4	N.D.
carbon source	m-Inositol (C)	+0.1	+0.2	-3.5	-1.7	N.D.
stress	Nalidixic 0.025 mg/ml	+0.3	+0.1	-4.6	-0.6	N.D.
stress	Chloramphenicol 0.015 mg/ml	+0.4	+0.3	-4.6	-0.8	N.D.
stress	Chlorite 4 mM	-0.2	+0.3	-3.0	-1.8	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-2.7	-2.4	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.4	+0.1	-2.6	-2.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-1.0	-1.9	-2.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.0	-2.6	-2.2	N.D.
carbon source	L-Valine (C)	+0.1	+0.5	-2.7	-2.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.0	-2.6	-2.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.5	-2.8	-2.0	N.D.
soil	soil sample 7; outgrowth in LB	+0.3	+1.1	-3.2	-1.9	N.D.
carbon source	Putrescine (C)	+0.5	+0.6	-3.1	-1.7	N.D.
motility	inner cut, LB soft agar motility assay	+0.4	+0.6	-2.2	-2.4	N.D.
stress	Choline chloride 300 mM	+1.4	+0.3	-3.1	+0.8	N.D.