Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23745	PS417_23755	PS417_23760	PS417_23765	PS417_23770
ecofab	LB in EcoFAB_3.5mL	-0.1	-0.8	-0.9	-0.4	-3.1
stress	methylglyoxal 0.032 vol%	-0.1	-0.5	+0.3	-1.3	-3.7
stress	Gentamicin 0.008 mg/ml	-0.1	+0.4	-0.4	-1.3	-3.5
soil	soil sample 3; outgrowth in LB	-0.2	-0.6	-0.8	-0.4	-2.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.5	+0.0	-1.5	-2.7
ecofab	LB 0.5x in EcoFAB_3.5mL	+0.0	-1.2	-0.1	-0.2	-3.0
soil	soil sample 5; outgrowth in LB	+0.1	-0.4	-0.4	-0.9	-2.9
stress	Benzalkonium Chloride 0.012 mg/ml	-0.1	-0.6	-0.2	+0.1	-3.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	-0.6	-0.2	-0.4	-3.2
soil	soil sample 6; outgrowth in LB	+0.1	-2.1	+0.1	+0.0	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.9	+0.4	-0.0	-2.6
stress	Spectinomycin 0.4 mg/ml	-0.1	+0.5	-0.2	-0.0	-4.2
stress	Nalidixic 0.025 mg/ml	-0.0	+0.2	+0.3	+0.1	-4.6
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.1	-0.5	+0.1	+0.2	-3.6
motility	outer cut, LB soft agar motility assay	-0.0	-0.9	+0.1	+0.2	-3.0
stress	Nalidixic 0.015 mg/ml	+0.1	+0.2	+0.4	+0.2	-4.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	-1.3	-0.5	+0.7	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.5	-0.0	-0.3	-3.6
soil	soil sample 8; outgrowth in LB	-0.3	-0.5	+0.1	+0.4	-3.2
stress	Chloramphenicol 0.015 mg/ml	-0.1	+0.5	+0.4	+0.3	-4.6
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.4	+0.2	+0.4	-3.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.3	+0.4	+0.1	-3.6
stress	Chloramphenicol 0.0075 mg/ml	-0.0	+0.5	+0.3	+0.1	-3.7
soil	soil sample 7; outgrowth in LB	-0.0	-0.3	+0.3	+1.1	-3.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.8	+0.3	-0.4	-2.9
carbon source	Carbon source D-Mannitol 5 mM	-0.0	+0.5	+0.1	+0.7	-3.2
carbon source	Putrescine (C)	-0.0	+0.5	+0.5	+0.6	-3.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	+1.0	+0.6	-0.5	-2.6
stress	Choline chloride 300 mM	+0.1	+0.6	+1.4	+0.3	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+1.2	+0.7	+0.6	-2.6