Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23725	PS417_23730	PS417_23735	PS417_23740	PS417_23745
carbon source	L-Valine (C)	-4.9	-4.0	-0.3	+0.2	-0.1
carbon source	L-Valine (C)	-4.0	-3.9	-0.8	-0.0	+0.1
carbon source	L-Leucine (C)	-3.2	-0.4	-0.3	+0.1	-0.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.5	+0.1	-0.4	-0.1	+0.1
stress	Gentamicin 0.008 mg/ml	-1.2	-0.1	+0.3	-0.2	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	+0.3	-0.4	+0.1	-0.4
stress	Nalidixic 0.015 mg/ml	-1.4	+0.0	-0.0	+0.0	+0.1
soil	soil sample 8; outgrowth in LB	-1.4	+0.2	+0.1	+0.2	-0.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.6	+0.2	+0.0	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.2	+0.2	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-1.1	-0.0	-0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.4	-0.2	-0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	-0.1	-0.3	+0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.7	+0.3	+0.8	-0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.2	+0.5	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	-0.0	+0.4	+0.1	+0.1
phage	P. simiae Grant Run MOI 10	-1.0	+0.3	+0.4	+0.1	-0.1
soil	soil sample 2; outgrowth in LB	-0.6	+0.4	-0.2	+0.4	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.2	-0.6	+0.5	+0.3
supernatant control	Vogels_fungal_media 0.1X	+0.9	-0.0	-0.6	+0.1	-0.1
soil	soil sample 5; outgrowth in LB	-1.0	+0.6	+0.1	+0.6	+0.1
carbon source	2-Deoxy-D-Ribose (C)	+0.9	-0.3	-0.1	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	-0.3	-0.3	+0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.3	+0.8	+0.4	+0.2
soil	soil sample 3; outgrowth in LB	+0.7	-0.1	+0.3	+0.4	-0.2
carbon source	Trisodium citrate (C)	-0.2	-0.0	+1.5	+0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.2	+0.2	+0.2	+0.3
phage	P. simiae OR Antrim MOI 0.1	+0.9	-0.0	+0.7	-0.0	-0.0
soil	soil sample 7; outgrowth in LB	+0.6	+0.1	+0.4	+0.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.5	+0.3	-0.4	+0.2	-0.1