Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23705	PS417_23710	PS417_23715	PS417_23720	PS417_23725
carbon source	L-Tryptophan (C)	-4.9	-5.2	+0.1	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.3	-4.2	-1.4	N.D.	+1.1
carbon source	L-Valine (C)	-0.3	-0.3	-0.7	N.D.	-4.0
carbon source	L-Valine (C)	+0.5	-0.3	-0.3	N.D.	-4.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-1.0	-1.5	N.D.	-1.8
seeds	Growth on radish seeds for 72 hours	-0.7	-0.6	-1.4	N.D.	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-0.7	-1.7	N.D.	+0.0
soil	soil sample 5; outgrowth in LB	-0.8	+0.0	-1.3	N.D.	-1.0
seeds	Growth on radish seeds for 24 hours	-0.4	-0.6	-1.1	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.1	-1.0	N.D.	-1.1
carbon source	L-Leucine (C)	+0.0	+0.4	+0.4	N.D.	-3.2
phage	JP1 MOI 0.1	-0.3	-0.0	-1.4	N.D.	-0.6
soil	soil sample 2; outgrowth in LB	-0.3	-0.5	-0.8	N.D.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.4	+0.1	-1.0	N.D.	+0.3
phage	JP1 MOI 10	+0.5	-0.2	-2.0	N.D.	+0.2
motility	inner cut, LB soft agar motility assay	-0.7	-0.6	-0.8	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.5	+0.2	N.D.	-1.7
phage	P. simiae OR1 MOI 0.1	+0.7	-1.0	-0.6	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.8	+0.9	N.D.	-0.9
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.5	+0.3	+0.8	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.4	-0.7	+0.5	N.D.	+0.7
nophagecontrol	Only library	+0.7	-0.5	-1.0	N.D.	-0.1
soil	soil sample 8; outgrowth in LB	-0.3	-0.2	+1.2	N.D.	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.4	-0.9	N.D.	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	-1.5	N.D.	+0.8
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+0.7	-0.8	N.D.	+0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.4	+1.7	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.2	-0.9	N.D.	+2.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+1.3	+0.5	N.D.	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	+1.2	N.D.	+0.7