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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF461 and GFF462 overlap by 4 nucleotides
GFF462 and GFF463 are separated by 100 nucleotides
GFF463 and GFF464 are separated by 28 nucleotides
GFF464 and GFF465 are separated by 112 nucleotides
GFF461 - Enoyl-CoA hydratase (EC 4.2.1.17), at 500,155 to 500,955
GFF461
GFF462 - BUG/TctC family periplasmic protein, at 500,952 to 501,938
GFF462
GFF463 - Malonyl-CoA decarboxylase (EC 4.1.1.9), at 502,039 to 503,505
GFF463
GFF464 - Transcriptional regulator, GntR family, at 503,534 to 504,202
GFF464
GFF465 - Prolipoprotein diacylglyceryl transferase, at 504,315 to 505,139
GFF465
Group
Condition
GFF461
GFF462
GFF463
GFF464
GFF465
complex community
Community=guar; Passage=4
-0.3
+0.1
-1.4
+0.1
N.D.
complex community
Community=guar; Passage=4
-0.9
-0.3
+0.1
-0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.3
-0.8
-0.0
N.D.
complex community
Community=Locust bean gum; Passage=4
-2.4
+0.0
+0.7
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.3
-0.5
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-0.1
-0.4
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.1
-0.4
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.1
-0.4
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.2
-0.6
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.1
-0.3
-0.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
-0.2
-0.1
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.0
-0.3
-0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.0
-0.5
-0.1
N.D.
complex community
Community=guar; Passage=4
+0.0
-0.2
-0.8
+0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.2
-0.6
+0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.5
-0.1
+0.1
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.1
+0.3
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.2
-0.2
-0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.1
+0.2
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.1
-0.5
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.7
+0.5
-0.0
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.1
-0.2
-0.2
N.D.
complex community
Community=arabino-guar; Passage=4
+0.0
+0.4
-0.2
-0.1
N.D.
complex community
Community=guar; Passage=4
+0.2
+0.3
-0.4
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
+0.5
+0.0
-0.5
+0.3
N.D.
phage
phage_bap4
+0.4
-0.1
+0.1
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.4
+0.6
+0.3
-0.2
N.D.
phage
phage_bap4
+0.3
-0.2
+0.3
-0.0
N.D.
phage
phage_bap4
-0.1
-0.0
+0.4
+0.2
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.5
+0.3
+0.0
+0.0
N.D.
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