Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_23650	PS417_23655	PS417_23660	PS417_23665	PS417_23670
carbon source	L-Tryptophan (C)	-5.0	-3.9	-3.1	-4.0	-2.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.7	-4.0	-0.1	-0.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.2	-0.6	-0.8
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.4	-0.2	-0.3	-0.6	-0.5
phage	P. simiae ORA MOI 1	-0.2	-0.5	-0.4	-0.3	-0.4
phage	P. simiae OR Antrim MOI 10	-0.7	-0.4	-0.2	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.0	-0.1	-1.1	-0.5
soil	soil sample 3; outgrowth in LB	-0.6	+0.3	+0.4	-0.6	-0.8
stress	Gentamicin 0.008 mg/ml	+0.2	+0.2	+0.0	+0.0	-1.3
supernatant control	Vogels_fungal_media 0.1X	-0.3	+0.1	+0.1	+0.4	-1.1
phage	JP1 MOI 1	-0.1	-0.2	+0.8	-0.9	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-0.8	+0.3	+0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.2	+0.2	+0.1	-1.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	+0.5	+0.1	+0.3	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.7	+0.0	+1.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.3	-0.2	+0.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.0	+0.4	+0.5	-0.3
soil	soil sample 5; outgrowth in LB	-0.2	-0.2	+0.6	-0.6	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	+0.0	-0.5	+0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.5	-0.2	+0.4	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.0	-0.5	+1.0	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-0.5	-0.2	+0.5	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.1	-0.2	+1.0	+0.3
seeds	Growth on radish seeds for 24 hours	+0.1	+0.4	+0.1	-0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.3	-0.1	-0.2	+1.3
seeds	Growth on radish seeds for 72 hours	+0.4	+0.4	+0.3	-0.4	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.2	+0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.1	+0.0	+0.4	+0.1
carbon source	D-Glucosamine Hydrochloride (C)	+2.1	-0.0	-0.0	-0.1	+0.0
carbon source	D-Glucosamine Hydrochloride (C)	+2.1	+0.0	-0.1	-0.1	+0.3