Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23595	PS417_23600	PS417_23605	PS417_23610	PS417_23615
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.0	+0.3	-0.9	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.0	-0.6	-0.6	-1.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	+0.0	-0.2	-0.2	-1.4
motility	inner cut, LB soft agar motility assay	+0.1	-0.4	-0.5	-0.4	-0.8
soil	soil sample 7; outgrowth in LB	-0.2	-0.1	+0.3	+0.1	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.6	-0.4	-0.3	-0.9
seeds	Growth on radish seeds for 72 hours	-0.2	-0.4	+0.2	-0.9	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.4	-0.4	-0.5	-0.9
phage	JP1 MOI 10	+0.3	-0.2	-0.0	-1.2	-0.4
carbon source	Carbon source D-Mannitol 10 mM	-0.4	+0.2	-0.4	+0.1	-1.0
liquid stress	Scopoletin 3 mM; liquid stress	-0.5	+0.1	-0.1	+0.4	-1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.3	-0.5	+0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.4	+0.4	-0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.3	-0.4	-0.7	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.8	-0.2	+0.5	-0.5	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.5	-0.2	+1.7	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.1	-0.3	-0.0	-1.1
phage	JP1 MOI 1	-0.6	-0.2	+0.1	-0.7	+1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+0.3	-0.6	+0.1	-0.6
soil	soil sample 4; outgrowth in LB	+0.5	+0.1	-0.2	-0.7	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.1	+0.2	+0.4	-0.7
seeds	Growth on radish seeds for 72 hours	+0.2	+0.4	+1.0	-0.5	-0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.3	+0.3	-0.5	+0.8
phage	Wcs_0.1	+0.7	+0.3	+0.7	+0.3	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	-0.2	+0.4	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	-0.2	-0.2	-0.0	+1.1
stress	Gentamicin 0.008 mg/ml	+0.2	+0.1	+0.3	+0.7	+0.7
root	root sample 6; outgrowth in LB	+0.4	+0.3	+0.7	+0.8	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.1	+0.1	+1.8	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.7	+0.3	-0.0	+0.9