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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF459 and GFF460 are separated by 13 nucleotides
GFF460 and GFF461 are separated by 14 nucleotides
GFF461 and GFF462 are separated by 125 nucleotides
GFF462 and GFF463 overlap by 4 nucleotides
GFF459 - hypothetical protein, at 457,788 to 459,113
GFF459
GFF460 - Transcriptional regulator, AraC family, at 459,127 to 460,113
GFF460
GFF461 - Enoyl-CoA hydratase/isomerase, at 460,128 to 461,105
GFF461
GFF462 - Transcriptional regulator, AraC family, at 461,231 to 462,280
GFF462
GFF463 - Glycosyl transferase, group 1 family protein, at 462,277 to 463,374
GFF463
Group
Condition
GFF459
GFF460
GFF461
GFF462
GFF463
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.2
-0.5
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.0
-0.1
-0.3
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.0
-0.3
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
-0.6
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
+0.0
-0.2
-0.3
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
+0.1
-0.3
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.2
-0.2
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.1
-0.1
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.0
-0.2
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.1
+0.3
-0.5
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
+0.1
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.0
-0.3
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
-0.0
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.1
-0.0
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.0
+0.2
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.0
+0.1
-0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.0
-0.0
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.1
+0.2
+0.2
-0.1
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