Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23565 and PS417_23570 are separated by 197 nucleotidesPS417_23570 and PS417_23575 are separated by 161 nucleotidesPS417_23575 and PS417_23580 are separated by 135 nucleotidesPS417_23580 and PS417_23585 are separated by 251 nucleotides PS417_23565: PS417_23565 - octaprenyl-diphosphate synthase, at 5,096,745 to 5,097,713 _23565 PS417_23570: PS417_23570 - hypothetical protein, at 5,097,911 to 5,098,252 _23570 PS417_23575: PS417_23575 - hypothetical protein, at 5,098,414 to 5,098,671 _23575 PS417_23580: PS417_23580 - peptidylprolyl isomerase, at 5,098,807 to 5,099,424 _23580 PS417_23585: PS417_23585 - chemotaxis protein, at 5,099,676 to 5,101,595 _23585
Group Condition PS417_23565 PS417_23570 PS417_23575 PS417_23580 PS417_23585
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -1.2 -4.1 -0.2
phage P. simiae Grant Run MOI 0.1 N.D. +0.2 -2.3 -2.8 -0.5
phage JP1 MOI 1 N.D. -0.3 -1.9 -2.8 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 -0.7 -4.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -0.2 -4.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -0.3 -4.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 -0.8 -3.1 +0.1
phage JP1 MOI 1 N.D. +0.1 -1.5 -2.7 -0.1
phage JP1 MOI 10 N.D. -0.2 -0.9 -2.8 -0.2
phage P. simiae OR Antrim MOI 1 N.D. +0.1 -1.2 -2.8 -0.2
phage P. simiae Grant Run MOI 10 N.D. -0.1 -1.0 -2.8 -0.2
motility inner cut, LB soft agar motility assay N.D. -0.3 -0.2 -3.1 -0.4
phage P. simiae OR Antrim MOI 10 N.D. -0.6 -0.4 -2.9 +0.0
phage P. simiae OR Antrim MOI 0.1 N.D. +0.1 -0.8 -2.9 -0.2
phage P. simiae ORA MOI 1 N.D. -0.1 -0.6 -2.9 -0.2
phage P. simiae ORA MOI 0.1 N.D. +0.3 -0.6 -3.0 -0.3
phage P. simiae OR Antrim MOI 10 N.D. +0.1 -0.6 -2.7 -0.4
phage P. simiae ORA MOI 0.1 N.D. +0.2 -0.9 -3.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.9 -1.6 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 +0.1 -3.3 +0.0
phage P. simiae Grant Run MOI 0.1 N.D. -0.4 +0.1 -2.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.3 -0.6 -2.1 -0.2
phage JP1 MOI 0.1 N.D. -0.0 -0.6 -2.6 +0.1
phage P. simiae OR Antrim MOI 1 N.D. -0.3 +0.1 -2.8 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.7 -0.2 -2.2 +0.1
phage JP1 MOI 10 N.D. +0.1 -0.4 -2.7 +0.0
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -0.5 -2.3 +0.2
soil soil sample 8; outgrowth in LB N.D. +0.3 -0.1 -2.4 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 +0.5 -2.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +1.3 +0.1 +1.9 +0.4
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