Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23550 and PS417_23555 are separated by 192 nucleotidesPS417_23555 and PS417_23560 are separated by 34 nucleotidesPS417_23560 and PS417_23565 are separated by 239 nucleotidesPS417_23565 and PS417_23570 are separated by 197 nucleotides PS417_23550: PS417_23550 - GTPase CgtA, at 5,094,483 to 5,095,706 _23550 PS417_23555: PS417_23555 - 50S ribosomal protein L27, at 5,095,899 to 5,096,156 _23555 PS417_23560: PS417_23560 - 50S ribosomal protein L21, at 5,096,191 to 5,096,505 _23560 PS417_23565: PS417_23565 - octaprenyl-diphosphate synthase, at 5,096,745 to 5,097,713 _23565 PS417_23570: PS417_23570 - hypothetical protein, at 5,097,911 to 5,098,252 _23570
Group Condition PS417_23550 PS417_23555 PS417_23560 PS417_23565 PS417_23570
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
phage P. simiae OR Antrim MOI 10 N.D. N.D. N.D. N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
stress Cobalt chloride 0.16 mM N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
carbon source Carbon source D-Mannitol 10 mM N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.4
solid stress Scopoletin 1 mM; solid stress N.D. N.D. N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.5
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. N.D. +0.5
solid stress Scopoletin 1 mM; solid stress N.D. N.D. N.D. N.D. +0.5
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. N.D. N.D. +0.5
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. N.D. +0.6
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.3
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PS417_23550
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PS417_23555
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