Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23540 and PS417_23545 are separated by 15 nucleotidesPS417_23545 and PS417_23550 are separated by 109 nucleotidesPS417_23550 and PS417_23555 are separated by 192 nucleotidesPS417_23555 and PS417_23560 are separated by 34 nucleotides PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239 _23540 PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373 _23545 PS417_23550: PS417_23550 - GTPase CgtA, at 5,094,483 to 5,095,706 _23550 PS417_23555: PS417_23555 - 50S ribosomal protein L27, at 5,095,899 to 5,096,156 _23555 PS417_23560: PS417_23560 - 50S ribosomal protein L21, at 5,096,191 to 5,096,505 _23560
Group Condition PS417_23540 PS417_23545 PS417_23550 PS417_23555 PS417_23560
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -7.5 N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -7.4 N.D. N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.0 -7.4 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.0 -7.3 N.D. N.D. N.D.
nitrogen source Ammonium chloride (N) +0.2 -6.9 N.D. N.D. N.D.
nitrogen source Adenine (N) +0.1 -6.6 N.D. N.D. N.D.
nitrogen source Cytidine (N) -0.0 -6.5 N.D. N.D. N.D.
nitrogen source Inosine (N) +0.0 -6.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -5.8 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -6.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -5.6 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.1 -6.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -5.8 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -6.1 N.D. N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.2 -6.0 N.D. N.D. N.D.
carbon source L-Isoleucine (C) -0.3 -5.8 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -5.6 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -5.8 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -6.0 N.D. N.D. N.D.
carbon source Inosine (C) +0.0 -6.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -5.7 N.D. N.D. N.D.
carbon source L-Asparagine (C) -0.3 -5.7 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -6.0 N.D. N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.1 -6.0 N.D. N.D. N.D.
carbon source L-Tryptophan (C) +0.1 -6.0 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.2 -5.9 N.D. N.D. N.D.
carbon source pyruvate (C) +0.2 -5.8 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.5 -5.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -5.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -5.6 N.D. N.D. N.D.
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