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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4593 and GFF4594 are separated by 153 nucleotides
GFF4594 and GFF4595 are separated by 175 nucleotides
GFF4595 and GFF4596 are separated by 61 nucleotides
GFF4596 and GFF4597 are separated by 110 nucleotides
GFF4593 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 233,476 to 234,372
GFF4593
GFF4594 - Aspartate ammonia-lyase (EC 4.3.1.1), at 234,526 to 235,998
GFF4594
GFF4595 - Transcriptional regulator, at 236,174 to 237,160
GFF4595
GFF4596 - Amidase family protein BDAG_03520, at 237,222 to 238,664
GFF4596
GFF4597 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 238,775 to 239,713
GFF4597
Group
Condition
GFF4593
GFF4594
GFF4595
GFF4596
GFF4597
complex community
Community=Locust bean gum; Passage=4
-1.1
-0.3
-0.7
+0.1
-0.1
complex community
Community=arabino-guar; Passage=4
-0.4
-0.2
-0.4
+0.1
-0.8
complex community
Community=guar; Passage=4
-0.6
-0.1
-0.1
-0.1
-0.9
complex community
Community=Locust bean gum; Passage=4
-0.8
-0.2
-0.3
-0.1
-0.2
complex community
Community=Kojac gum; Passage=4
-0.7
-0.3
-0.7
+0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.9
-0.1
-0.6
+0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.9
-0.3
-0.3
-0.1
+0.5
complex community
Community=guar; Passage=4
-0.8
+0.3
-0.1
-0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.2
-0.3
-0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
+0.0
-0.3
+0.0
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.0
-0.6
+0.1
-0.0
complex community
Community=guar; Passage=4
-0.4
+0.3
-1.1
-0.3
+0.7
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
-0.3
-0.0
+0.1
-0.1
complex community
Community=arabino-guar; Passage=4
-0.8
+0.2
-0.7
-0.0
+0.7
complex community
Community=guar; Passage=4
-0.4
+0.0
-0.6
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.0
-0.2
-0.1
-0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.0
+0.2
-0.1
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.2
-0.2
+0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.3
+0.2
-0.0
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-0.0
-0.5
-0.1
+0.3
complex community
Community=arabino-guar; Passage=4
-0.8
-0.1
+0.1
-0.1
+0.4
complex community
Community=Locust bean gum; Passage=1
-0.0
-0.0
-0.2
-0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.1
+0.2
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.1
+0.1
-0.1
+0.2
no phage control
no phage control
+0.2
+0.2
+0.0
-0.2
-0.0
complex community
Community=arabino-guar; Passage=4
-0.7
+0.3
+0.2
-0.1
+0.6
no phage control
no phage control
+0.2
-0.1
+0.1
-0.1
+0.3
no phage control
no phage control
+0.3
+0.2
+0.2
-0.1
-0.1
phage
phage_bap4
+0.2
+0.1
+0.2
-0.1
+0.1
phage
phage_bap4
+0.2
+0.0
+0.3
-0.1
+0.3
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