Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23490	PS417_23495	PS417_23500	PS417_23505	PS417_23510
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.7	-0.1	-0.8	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.3	+0.2	-0.5	+0.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.7	-0.4	-0.8	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.9	-0.2	-1.3	+0.4	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.4	+0.0	-0.6	-0.6	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-1.4	+0.1	-0.6	-0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.8	+0.0	-0.2	+0.2	-0.9
phage	P. simiae OR Antrim MOI 10	-1.7	-0.7	+0.1	-0.0	+0.1
carbon source	NAG (C)	-1.4	-0.1	-0.8	+0.1	-0.2
soil	soil sample 8; outgrowth in LB	-2.0	-0.4	+0.1	+0.1	+0.3
phage	P. simiae ORA MOI 0.1	-1.8	-0.2	-0.3	+0.5	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.3	+1.0	-0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.4	+0.2	-0.5	+0.9
seeds	Growth on radish seeds for 72 hours	-1.5	-0.1	+0.0	+0.9	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.5	+0.4	-0.2	+0.0	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.2	-0.6	+0.6	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.4	+0.2	-0.6	-0.2	-0.4
root	root sample 6; outgrowth in LB	+1.6	-0.1	+0.4	-1.2	-0.1
phage	JP1 MOI 0.1	+1.6	-0.3	+0.5	-0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.8	+0.1	-0.3	+2.1	+0.7
phage	Wcs_1	-0.6	+0.3	-0.2	+1.3	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.4	-0.4	+1.8	+0.3
phage	JP1 MOI 1	+0.8	+0.5	+0.1	-0.6	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.8	-0.2	+0.4	-0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.9	+0.5	+0.4	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.4	+0.4	+0.3	+0.2	-0.3
seeds	Growth on radish seeds for 72 hours	+2.3	-0.2	-0.2	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.8	+0.7	+0.3	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+2.8	-0.5	+0.0	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	-0.1	+0.3	+4.8	+0.2