Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23485 and PS417_23490 are separated by 57 nucleotidesPS417_23490 and PS417_23495 are separated by 20 nucleotidesPS417_23495 and PS417_23500 are separated by 2 nucleotidesPS417_23500 and PS417_23505 are separated by 23 nucleotides PS417_23485: PS417_23485 - antibiotic biosynthesis monooxygenase, at 5,084,515 to 5,085,072 _23485 PS417_23490: PS417_23490 - dihydrofolate reductase, at 5,085,130 to 5,085,840 _23490 PS417_23495: PS417_23495 - GTP cyclohydrolase, at 5,085,861 to 5,086,415 _23495 PS417_23500: PS417_23500 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 5,086,418 to 5,086,789 _23500 PS417_23505: PS417_23505 - cell division protein DedD, at 5,086,813 to 5,087,109 _23505
Group Condition PS417_23485 PS417_23490 PS417_23495 PS417_23500 PS417_23505
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -2.7 -0.4 -0.8 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -2.7 -0.1 -0.8 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -4.3 +0.2 -0.5 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -0.7 -0.3 -0.5 -0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -2.4 +0.0 -0.6 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.0 -1.9 -0.2 -1.3 +0.4
soil soil sample 8; outgrowth in LB +0.1 -2.0 -0.4 +0.1 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 -1.4 +0.1 -0.6 -0.4
phage P. simiae ORA MOI 0.1 +0.4 -1.8 -0.2 -0.3 +0.5
phage P. simiae OR Antrim MOI 10 +1.0 -1.7 -0.7 +0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -0.5 +0.0 -0.0 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 +0.7 -0.0 +0.1 -0.1
seeds Growth on radish seeds for 72 hours -0.4 -1.5 -0.1 +0.0 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.1 -0.3 -0.7 +0.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3 -1.7 +0.1 -0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.5 -1.8 +0.0 -0.2 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.9 -0.3 +1.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -1.8 +0.1 -0.3 +2.1
stress Gentamicin 0.008 mg/ml -0.7 +0.9 -0.1 +0.5 -0.4
phage Wcs_1 -0.4 -0.6 +0.3 -0.2 +1.3
root root sample 6; outgrowth in LB +0.1 +1.6 -0.1 +0.4 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +1.3 +0.2 -0.9 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 +1.3 +0.1 +0.4 -0.2
phage JP1 MOI 0.1 +0.1 +1.6 -0.3 +0.5 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +1.8 -0.2 +0.4 -0.4
stress Cobalt chloride 0.16 mM -0.3 +1.3 +0.2 +0.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +2.8 -0.5 +0.0 +0.2
seeds Growth on radish seeds for 72 hours +0.3 +2.3 -0.2 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +1.8 +0.7 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -1.0 -0.1 +0.3 +4.8
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