Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF4586 and GFF4587 are separated by 133 nucleotidesGFF4587 and GFF4588 are separated by 83 nucleotidesGFF4588 and GFF4589 are separated by 3 nucleotidesGFF4589 and GFF4590 overlap by 4 nucleotides GFF4586 - 3-methylmercaptopropionyl-CoA ligase (DmdB), at 1,530,360 to 1,532,003 GFF4586 GFF4587 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 1,532,137 to 1,533,372 GFF4587 GFF4588 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 1,533,456 to 1,534,490 GFF4588 GFF4589 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 1,534,494 to 1,535,786 GFF4589 GFF4590 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 1,535,783 to 1,536,571 GFF4590
Group Condition GFF4586 GFF4587 GFF4588 GFF4589 GFF4590
carbon source Ying_all64 rep A; time point 3 +0.1 -0.1 -0.1 -0.5 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.1 -0.2 +0.0 -0.1 -0.4
carbon source Ying_sugar7 rep C; time point 1 +0.0 -0.0 -0.2 -0.1 -0.3
carbon source Ying_sugar7 rep A; time point 3 -0.1 +0.0 +0.0 -0.2 -0.3
carbon source Ying_AminoAcid20 rep A; time point 3 -0.0 -0.1 -0.1 -0.1 -0.2
carbon source Ying_OrganicAcid7 rep C; time point 1 +0.1 -0.0 +0.2 -0.4 -0.3
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.3 -0.0 +0.1 -0.1 -0.0
carbon source Ying_sugar7 rep C; time point 3 +0.0 +0.1 -0.1 -0.3 -0.1
carbon source Ying_all64 rep A; time point 1 -0.1 +0.0 -0.2 +0.0 -0.2
carbon source Ying_all64 rep C; time point 3 -0.2 +0.0 -0.0 +0.1 -0.3
carbon source Ying_OrganicAcid7 rep C; time point 2 +0.0 -0.0 -0.1 +0.1 -0.3
carbon source Ying_Others16 rep B; time point 3 +0.1 +0.1 -0.1 -0.3 +0.0
carbon source Ying_sugar7 rep A; time point 1 +0.2 +0.0 -0.2 -0.1 -0.1
carbon source Ying_Others16 rep B; time point 2 +0.1 +0.1 +0.1 -0.4 -0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.0 +0.0 +0.1 -0.3 +0.1
carbon source Ying_Nucleobase14 rep C; time point 2 +0.1 +0.0 -0.2 -0.2 +0.1
carbon source Ying_Nucleobase14 rep B; time point 2 +0.3 +0.2 -0.1 -0.1 -0.2
carbon source Ying_Others16 rep A; time point 1 -0.1 +0.1 +0.2 +0.1 -0.2
carbon source Ying_sugar7 rep A; time point 2 +0.1 +0.1 -0.1 -0.2 +0.2
carbon source Ying_AminoAcid20 rep B; time point 3 +0.1 +0.0 +0.2 -0.1 -0.1
carbon source Ying_AminoAcid20 rep C; time point 1 +0.3 +0.1 -0.1 -0.1 +0.0
carbon source Ying_Nucleobase14 rep A; time point 1 +0.3 +0.1 +0.0 -0.0 -0.2
carbon source Ying_Nucleobase14 rep C; time point 1 -0.2 +0.0 +0.3 +0.2 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 1 -0.1 -0.2 +0.0 +0.1 +0.3
carbon source Ying_sugar7 rep C; time point 2 +0.0 +0.2 -0.0 -0.1 +0.3
carbon source Ying_all64 rep C; time point 2 +0.0 -0.2 -0.1 +0.3 +0.3
carbon source Ying_Others16 rep A; time point 3 -0.3 -0.0 +0.4 +0.2 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 2 +0.1 +0.1 +0.1 +0.1 -0.0
carbon source Ying_all64 rep B; time point 1 +0.1 +0.1 +0.3 -0.1 +0.2
carbon source Ying_sugar7 rep B; time point 2 +0.2 +0.1 +0.2 -0.2 +0.3
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