Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23450	PS417_23455	PS417_23460	PS417_23465	PS417_23470
soil	soil sample 2; outgrowth in LB	-0.1	-0.5	-0.7	-0.4	-0.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	-1.4	-0.7	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.6	-0.4	-0.1	+0.1
phage	P. simiae Grant Run MOI 10	-0.1	-0.5	-0.8	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-0.5	-0.7	+0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.2	+0.1	-0.2	+0.1
phage	JP1 MOI 1	+0.2	-1.0	-0.5	+0.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.8	-0.6	+0.2	+0.3
phage	P. simiae OR1 MOI 0.1	-0.4	+0.8	-0.8	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.4	-0.7	+0.2	-0.0
carbon source	L-Valine (C)	-0.6	-0.5	-0.2	-0.3	+0.7
phage	Wcs_0.1	+0.4	-0.6	-0.5	-0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.5	-0.5	+0.4	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.4	+0.9	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.8	-0.6	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.9	-0.5	+0.0	+1.2
supernatant control	Vogels_fungal_media 0.1X	+0.4	-0.5	-0.7	+0.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.4	+0.6	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.5	+0.4	-0.4	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	+0.7	+0.6	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.9	-0.3	-0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	-0.5	+0.6	+0.7
seeds	Growth on radish seeds for 72 hours	+0.2	-0.7	-0.2	+0.7	+0.4
carbon source	L-Valine (C)	+0.9	-0.1	+0.3	-0.8	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.8	-0.4	-0.4	+0.1
phage	P. simiae OR Antrim MOI 0.1	-0.0	-0.1	+0.6	+0.8	-0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.3	+1.2	+0.0	+0.3	+0.1
stress	methylglyoxal 0.032 vol%	-0.3	+0.8	+0.8	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.0	+0.6	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+2.0	+0.6	+0.5	+0.2