Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23370 and PS417_23375 are separated by 11 nucleotidesPS417_23375 and PS417_23380 overlap by 1 nucleotidesPS417_23380 and PS417_23385 are separated by 3 nucleotidesPS417_23385 and PS417_23390 are separated by 3 nucleotides PS417_23370: PS417_23370 - protoheme IX farnesyltransferase, at 5,059,146 to 5,060,033 _23370 PS417_23375: PS417_23375 - cytochrome C oxidase, at 5,060,045 to 5,060,386 _23375 PS417_23380: PS417_23380 - cytochrome o ubiquinol oxidase subunit III, at 5,060,386 to 5,061,012 _23380 PS417_23385: PS417_23385 - cytochrome o ubiquinol oxidase subunit I, at 5,061,016 to 5,063,034 _23385 PS417_23390: PS417_23390 - ubiquinol oxidase subunit II, at 5,063,038 to 5,063,979 _23390
Group Condition PS417_23370 PS417_23375 PS417_23380 PS417_23385 PS417_23390
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 -3.2 -4.3 -5.6 -3.9
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.8 -3.2 -4.3 -4.5 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.2 -4.8 -3.3 -3.8 -3.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.1 -3.3 -4.5 -4.3 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 -3.9 -4.8 -3.7 -3.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.6 -3.2 -3.3 -3.9 -3.8
solid stress Fraxetin 3 mM; solid stress -2.1 -2.9 -4.6 -4.2 -3.7
solid stress Fraxetin 3 mM; solid stress -3.5 -3.3 -2.5 -4.5 -3.4
carbon source octanoate (C) -2.6 -4.2 -3.8 -3.3 -3.1
solid stress Fraxetin 3 mM; solid stress -1.7 -4.2 -3.7 -4.0 -3.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.3 -2.6 -2.5 -4.1 -3.5
carbon source octanoate (C) -2.7 -2.2 -3.3 -3.5 -3.6
solid stress Fraxetin 3 mM; solid stress -2.3 -2.9 -3.1 -3.5 -2.9
solid stress Fraxetin 2 mM; solid stress -1.7 -2.1 -3.8 -3.6 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 -3.3 -2.7 -3.5 -2.0
liquid stress Fraxetin 3 mM; liquid stress -1.2 -2.8 -4.4 -3.0 -2.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -1.8 -3.8 -3.2 -2.7 -2.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.8 -4.9 -3.5 -2.0 -1.3
soil soil sample 4; outgrowth in LB -3.5 -2.4 -2.7 -2.0 -2.5
solid stress Fraxetin 2 mM; solid stress -2.6 -3.4 -1.6 -3.1 -2.2
liquid stress Fraxetin 3 mM; liquid stress -1.2 -2.0 -4.4 -3.1 -2.1
soil soil sample 8; outgrowth in LB -1.8 -2.6 -3.7 -2.1 -2.6
solid stress Fraxetin 2 mM; solid stress -2.2 -2.7 -3.6 -2.2 -2.1
soil soil sample 5; outgrowth in LB -2.4 -2.9 -2.0 -3.1 -2.1
soil soil sample 6; outgrowth in LB -2.1 -2.1 -2.6 -3.0 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -4.9 -2.9 -1.6 -1.2
stress Paraquat dichloride 0.008 mg/ml +3.2 +3.8 +3.4 +3.6 +3.3
stress Thallium(I) acetate 0.0625 mg/ml +3.6 +3.9 +4.6 +4.1 +4.3
stress methylglyoxal 0.032 vol% +6.0 +7.0 +7.7 +6.6 +6.8
stress Gentamicin 0.008 mg/ml +7.7 +8.3 +8.7 +7.8 +8.5
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PS417_23375
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PS417_23385
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PS417_23390
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