Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23285	PS417_23290	PS417_23295	PS417_23300	PS417_23305
phage	P. simiae OR Antrim MOI 1	N.D.	-0.9	-0.0	-0.3	-0.2
stress	methylglyoxal 0.032 vol%	N.D.	-0.8	+0.2	-0.9	+0.1
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.4	+0.2	-0.6	-0.0
phage	P. simiae OR1 MOI 0.1	N.D.	-1.1	+0.3	+0.1	-0.1
phage	P. simiae ORA MOI 0.1	N.D.	-0.6	-0.0	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.3	+0.3	-0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.8	-0.0	+0.6	-0.1
phage	P. simiae ORA MOI 10	N.D.	-0.3	+0.4	-0.4	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.8	-0.2	+0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-0.1	+0.5	+0.1
soil	soil sample 4; outgrowth in LB	N.D.	+0.3	-0.2	-0.3	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.2	-0.1	+0.4	-0.4
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.0	-0.4	+0.7	-0.1
phage	JP1 MOI 10	N.D.	-0.1	+0.4	-0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.1	-0.0	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.1	+0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.3	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+0.1	+0.4	-0.4
liquid stress	Scopoletin 3 mM; liquid stress	N.D.	+0.4	-0.1	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.1	+0.2	+0.8	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.3	+0.5	-0.2
phage	P. simiae Grant Run MOI 0.1	N.D.	-0.2	+0.2	+0.4	+0.4
seeds	Growth on radish seeds for 72 hours	N.D.	-0.5	+0.2	+0.9	+0.3
carbon source	Carbon source D-Mannitol 2.5 mM	N.D.	+0.3	+0.0	+0.8	-0.2
soil	soil sample 6; outgrowth in LB	N.D.	+0.1	-0.1	+0.5	+0.6
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	+0.6	-0.0	+0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.4	+0.2	+0.2
soil	soil sample 8; outgrowth in LB	N.D.	+0.5	+0.1	+0.3	+0.3
phage	P. simiae OR Antrim MOI 10	N.D.	+0.4	+0.5	+0.7	-0.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.0	+0.4	+0.5	+0.5