Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23195 and PS417_23200 are separated by 99 nucleotidesPS417_23200 and PS417_23205 are separated by 50 nucleotidesPS417_23205 and PS417_23210 are separated by 291 nucleotidesPS417_23210 and PS417_23215 are separated by 2 nucleotides PS417_23195: PS417_23195 - scaffolding protein, at 5,025,325 to 5,025,711 _23195 PS417_23200: PS417_23200 - cysteine desulfurase, at 5,025,811 to 5,027,025 _23200 PS417_23205: PS417_23205 - transcriptional regulator, at 5,027,076 to 5,027,567 _23205 PS417_23210: PS417_23210 - serine acetyltransferase, at 5,027,859 to 5,028,641 _23210 PS417_23215: PS417_23215 - RNA methyltransferase, at 5,028,644 to 5,029,414 _23215
Group Condition PS417_23195 PS417_23200 PS417_23205 PS417_23210 PS417_23215
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.2 -3.8 -0.7
phage P. simiae OR Antrim MOI 1 N.D. N.D. -1.1 -1.4 -1.0
phage JP1 MOI 10 N.D. N.D. -0.6 -2.1 -0.6
phage P. simiae OR Antrim MOI 0.1 N.D. N.D. -1.3 -1.0 -0.9
stress Gentamicin 0.008 mg/ml N.D. N.D. -2.1 -1.3 +0.5
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -1.7 -0.7 -0.2
soil soil sample 5; outgrowth in LB N.D. N.D. -0.8 -2.1 +0.3
stress Thallium(I) acetate 0.0625 mg/ml N.D. N.D. -1.0 -0.8 -0.7
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. -0.0 -2.3 +0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.8 +0.4 -1.3
seeds Growth on radish seeds for 72 hours N.D. N.D. +0.5 -1.4 -0.6
root root sample 6; outgrowth in LB N.D. N.D. -1.3 -0.8 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.2 -1.8 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.6 -1.7 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -1.4 -0.2 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.5 -1.9 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.0 -1.5 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +2.8 -2.6 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.2 -1.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +1.1 -1.0 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.2 +2.3 -0.4
stress methylglyoxal 0.032 vol% N.D. N.D. -0.1 +1.9 +0.8
stress R2A with Fusaric 120 ug/mL N.D. N.D. +1.2 +1.1 +0.3
stress R2A with Fusaric 120 ug/mL N.D. N.D. +1.6 +0.6 +0.5
stress R2A with Fusaric 120 ug/mL N.D. N.D. +1.7 +1.0 +0.3
stress R2A with Fusaric 120 ug/mL N.D. N.D. +1.9 +0.8 +0.5
stress R2A with Fusaric 120 ug/mL N.D. N.D. +2.1 +1.0 +0.3
carbon source Trisodium citrate (C) N.D. N.D. -0.3 +4.5 +1.7
carbon source Trisodium citrate (C) N.D. N.D. -0.7 +4.9 +2.1
stress Cobalt chloride 0.16 mM N.D. N.D. +2.4 +7.3 +0.9
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PS417_23195
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PS417_23200
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PS417_23210
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PS417_23215
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