Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23130 and PS417_23135 overlap by 8 nucleotidesPS417_23135 and PS417_23140 are separated by 41 nucleotidesPS417_23140 and PS417_23145 are separated by 21 nucleotidesPS417_23145 and PS417_23150 are separated by 2 nucleotides PS417_23130: PS417_23130 - dehydrogenase, at 5,014,267 to 5,015,418 _23130 PS417_23135: PS417_23135 - GTP-binding protein, at 5,015,411 to 5,016,052 _23135 PS417_23140: PS417_23140 - histidinol dehydrogenase, at 5,016,094 to 5,017,383 _23140 PS417_23145: PS417_23145 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 5,017,405 to 5,018,514 _23145 PS417_23150: PS417_23150 - Cro/Cl family transcriptional regulator, at 5,018,517 to 5,019,500 _23150
Group Condition PS417_23130 PS417_23135 PS417_23140 PS417_23145 PS417_23150
stress Doxycycline hyclate 0.001 mg/ml N.D. -1.9 N.D. N.D. -1.5
stress Gentamicin 0.008 mg/ml N.D. -1.6 N.D. N.D. -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.9 N.D. N.D. +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 N.D. N.D. -1.2
stress Spectinomycin 0.4 mg/ml N.D. -1.2 N.D. N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 N.D. N.D. -1.8
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.5 N.D. N.D. -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.8 N.D. N.D. +0.7
supernatant control Vogels_fungal_media 0.1X N.D. -1.5 N.D. N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.4 N.D. N.D. +0.8
liquid stress Fraxetin 3 mM; liquid stress N.D. -1.4 N.D. N.D. +1.0
solid stress Fraxetin 3 mM; solid stress N.D. -1.2 N.D. N.D. +1.3
solid stress Fraxetin 3 mM; solid stress N.D. -1.1 N.D. N.D. +1.6
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.5 N.D. N.D. +1.5
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.6 N.D. N.D. +1.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.6 N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.0 N.D. N.D. +1.1
phage P. simiae OR Antrim MOI 0.1 N.D. +1.2 N.D. N.D. +1.0
phage P. simiae OR Antrim MOI 0.1 N.D. +1.0 N.D. N.D. +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.7 N.D. N.D. +1.5
phage JP1 MOI 1 N.D. +1.2 N.D. N.D. +1.1
stress methylglyoxal 0.032 vol% N.D. +1.2 N.D. N.D. +1.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +1.9 N.D. N.D. +0.4
phage P. simiae OR1 MOI 0.1 N.D. +0.8 N.D. N.D. +1.5
phage P. simiae Grant Run MOI 0.1 N.D. +1.1 N.D. N.D. +1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.0 N.D. N.D. +1.4
nophagecontrol Only library N.D. +1.3 N.D. N.D. +1.1
phage P. simiae Grant Run MOI 0.1 N.D. +1.5 N.D. N.D. +1.3
phage JP1 MOI 0.1 N.D. +2.5 N.D. N.D. +0.8
stress 1-ethyl-3-methylimidazolium chloride 200 mM N.D. +1.2 N.D. N.D. +2.7
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PS417_23130
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PS417_23135
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PS417_23145
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