Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_23035	PS417_23040	PS417_23045	PS417_23050	PS417_23055
carbon source	D-Trehalose (C)	-3.4	-3.4	-5.4	-4.1	N.D.
carbon source	D-Trehalose (C)	-3.9	-3.6	-3.4	-4.0	N.D.
phage	P. simiae Grant Run MOI 10	-0.1	-0.2	-2.1	-0.2	N.D.
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.4	-0.3	-0.6	-0.8	N.D.
stress	methylglyoxal 0.032 vol%	-0.7	-0.0	-1.0	-0.2	N.D.
stress	2-Furfuraldehyde 0.06 vol%	-0.2	-0.3	-1.3	-0.0	N.D.
seeds	Growth on radish seeds for 72 hours	+0.2	+0.0	-1.4	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.0	-1.1	-0.3	N.D.
carbon source	L-Valine (C)	+0.0	-0.3	-0.4	-1.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.2	-0.5	-0.6	N.D.
phage	Wcs_0.1	-0.1	+0.2	-1.4	-0.2	N.D.
phage	Wcs_1	+0.3	+0.0	-0.9	-0.7	N.D.
soil	soil sample 2; outgrowth in LB	-0.2	+0.0	-1.2	+0.2	N.D.
soil	soil sample 5; outgrowth in LB	+0.3	+0.0	-1.3	-0.1	N.D.
phage	P. simiae ORA MOI 0.1	+0.3	-0.1	-0.3	-0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.3	+0.4	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.2	+0.5	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.1	+0.5	-0.6	N.D.
phage	JP1 MOI 1	+0.5	-0.0	-0.6	+0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.1	+1.1	-0.2	N.D.
solid stress	Fraxetin 3 mM; solid stress	+0.5	+0.3	-0.5	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	+0.0	+0.8	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.1	+0.9	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	+0.9	+0.5	N.D.
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	+0.6	+0.2	+0.3	+0.5	N.D.
solid stress	Fraxetin 3 mM; solid stress	+0.8	+0.4	-0.2	+0.7	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.2	+1.0	+0.2	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	+0.4	+0.1	+1.3	+0.1	N.D.
root	root sample 6; outgrowth in LB	+0.4	+0.0	+1.3	+0.3	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.7	+0.7	+0.7	+0.2	N.D.