Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_23025 and PS417_23030 are separated by 136 nucleotidesPS417_23030 and PS417_23035 are separated by 2 nucleotidesPS417_23035 and PS417_23040 are separated by 179 nucleotidesPS417_23040 and PS417_23045 are separated by 69 nucleotides PS417_23025: PS417_23025 - murein transglycosylase, at 4,988,622 to 4,990,082 _23025 PS417_23030: PS417_23030 - PTS glucose transporter subunit IIB, at 4,990,219 to 4,990,497 _23030 PS417_23035: PS417_23035 - D-trehalose PTS system, I, HPr, and IIA components (from data), at 4,990,500 to 4,993,016 _23035 PS417_23040: PS417_23040 - D-trehalose outer membrane porin (from data), at 4,993,196 to 4,994,416 _23040 PS417_23045: PS417_23045 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data), at 4,994,486 to 4,996,132 _23045
Group Condition PS417_23025 PS417_23030 PS417_23035 PS417_23040 PS417_23045
carbon source D-Trehalose (C) +0.3 N.D. -3.4 -3.4 -5.4
carbon source D-Trehalose (C) +0.2 N.D. -3.9 -3.6 -3.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.7 N.D. -0.5 -0.2 +0.0
stress Doxycycline hyclate 0.001 mg/ml -3.7 N.D. -0.5 -0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.6 N.D. -0.2 -0.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.9 N.D. -0.3 -0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.6 N.D. -0.5 -0.1 +0.5
phage P. simiae Grant Run MOI 10 -1.2 N.D. -0.1 -0.2 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 N.D. -0.1 -0.2 -0.6
soil soil sample 2; outgrowth in LB -2.0 N.D. -0.2 +0.0 -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 N.D. -0.2 +0.0 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.5 N.D. +0.0 -0.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.8 N.D. -0.3 -0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 N.D. -0.7 -0.2 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -3.0 N.D. -0.1 -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.2 N.D. +0.1 -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.4 N.D. -0.5 -0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -3.1 N.D. +0.2 +0.0 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.7 N.D. +0.3 +0.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.8 N.D. -0.1 +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.7 N.D. +0.2 -0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 N.D. -0.4 -0.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.4 N.D. -0.1 +0.0 +0.7
soil soil sample 7; outgrowth in LB -2.3 N.D. +0.1 +0.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 N.D. +0.4 -0.0 +0.9
root root sample 6; outgrowth in LB -1.5 N.D. +0.4 +0.0 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.3 N.D. -0.2 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +5.1 N.D. -0.1 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +4.0 N.D. +0.2 -0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +4.4 N.D. +0.4 +0.2 +0.2
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