Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22995	PS417_23000	PS417_23005	PS417_23015	PS417_23020
carbon source	NAG (C)	-5.8	-4.2	+0.0	-0.1	N.D.
carbon source	NAG (C)	-4.2	-4.5	+0.0	+0.0	N.D.
phage	P. simiae ORA MOI 0.1	-0.3	-0.3	-0.5	-0.8	N.D.
phage	JP1 MOI 0.1	+0.1	+0.1	-0.3	-1.6	N.D.
solid stress	80% Methanol 2 mM; solid stress	-0.1	+0.2	-0.7	-1.1	N.D.
phage	Wcs_1	+0.0	+0.3	+0.9	-1.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	-0.1	-0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.0	-0.7	-0.5	N.D.
soil	soil sample 6; outgrowth in LB	+0.9	+0.2	-0.4	-1.0	N.D.
liquid stress	Scopoletin 3 mM; liquid stress	+0.3	+0.2	+0.2	-1.0	N.D.
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.1	+0.6	-0.8	N.D.
seeds	Growth on radish seeds for 72 hours	+0.4	-0.3	+0.5	-0.6	N.D.
stress	Gentamicin 0.008 mg/ml	-0.2	-0.4	-0.6	+1.1	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+1.0	-0.0	-0.0	-1.0	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+0.6	-0.5	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	+0.8	-0.3	N.D.
soil	soil sample 5; outgrowth in LB	+1.0	-0.1	+0.1	-0.6	N.D.
solid stress	Fraxetin 2 mM; solid stress	+0.7	+0.0	+0.5	-0.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.2	-0.4	+0.8	N.D.
soil	soil sample 4; outgrowth in LB	+1.1	+0.3	-0.1	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.1	+0.9	+0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	+0.8	+0.8	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.5	+0.9	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	+0.3	-0.1	-0.3	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.1	+0.4	+0.0	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.1	+0.2	+1.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.0	-0.2	+1.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.1	+0.2	+1.0	N.D.
root	root sample 6; outgrowth in LB	+1.3	-0.1	-0.1	+0.6	N.D.
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.2	+0.3	+0.7	-0.1	N.D.