Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22990	PS417_22995	PS417_23000	PS417_23005	PS417_23015
carbon source	NAG (C)	-3.5	-5.8	-4.2	+0.0	-0.1
carbon source	NAG (C)	-3.5	-4.2	-4.5	+0.0	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.0	+0.0	-0.3	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-3.7	+0.1	+0.1	-0.0	+0.2
soil	soil sample 4; outgrowth in LB	-4.1	+1.1	+0.3	-0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-3.1	+0.2	-0.2	+0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.0	-0.5	+0.0	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	+0.1	+0.0	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.4	-0.1	-0.1	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.8	+0.2	-0.1	+0.4	-0.0
phage	Wcs_1	-1.6	+0.0	+0.3	+0.9	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.7	+0.1	+0.0	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.1	-0.0	-0.1	+0.4	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-2.5	+0.1	+0.1	-0.0	+0.4
seeds	Growth on radish seeds for 72 hours	-1.9	+0.4	-0.3	+0.5	-0.6
carbon source	D-Glucosamine Hydrochloride (C)	-2.7	+0.3	+0.5	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	+0.9	-0.0	-0.7	-0.5
stress	Gentamicin 0.008 mg/ml	-1.3	-0.2	-0.4	-0.6	+1.1
soil	soil sample 3; outgrowth in LB	-1.8	+0.7	+0.0	-0.4	+0.2
soil	soil sample 5; outgrowth in LB	-1.3	+1.0	-0.1	+0.1	-0.6
root	root sample 6; outgrowth in LB	-2.5	+1.3	-0.1	-0.1	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.4	+1.1	+0.4	+0.0	-0.2
carbon source	D-Glucosamine Hydrochloride (C)	-1.4	-0.0	+0.6	+0.6	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4	+0.0	+0.0	-0.2	+1.6
soil	soil sample 6; outgrowth in LB	+0.6	+0.9	+0.2	-0.4	-1.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.7	+1.0	-0.0	-0.0	-1.0
supernatant control	Vogels_fungal_media 0.1X	+1.6	-0.3	-0.3	+0.2	-0.5
phage	P. simiae OR Antrim MOI 0.1	+2.0	-0.1	+0.2	-0.5	-0.4
seeds	Growth on radish seeds for 24 hours	+2.0	-0.3	-0.0	+0.3	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.7	+1.2	+0.3	+0.7	-0.1