Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02280 and PS417_02285 are separated by 59 nucleotidesPS417_02285 and PS417_02290 overlap by 4 nucleotidesPS417_02290 and PS417_02295 are separated by 55 nucleotidesPS417_02295 and PS417_02300 are separated by 158 nucleotides PS417_02280: PS417_02280 - GlcNAc-PI de-N-acetylase, at 520,826 to 522,226 _02280 PS417_02285: PS417_02285 - glycosyl transferase family 1, at 522,286 to 523,434 _02285 PS417_02290: PS417_02290 - glycosyl transferase, at 523,431 to 524,312 _02290 PS417_02295: PS417_02295 - polymerase, at 524,368 to 526,224 _02295 PS417_02300: PS417_02300 - lipid transporter ATP-binding/permease, at 526,383 to 528,188 _02300
Group Condition PS417_02280 PS417_02285 PS417_02290 PS417_02295 PS417_02300
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -6.6 N.D. N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -6.5 N.D. N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay -6.5 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -6.3 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -6.3 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -6.2 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -6.2 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -6.2 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -6.1 N.D. N.D. N.D. N.D.
soil soil sample 2; outgrowth in LB -5.3 N.D. N.D. N.D. N.D.
stress Spectinomycin 0.4 mg/ml -4.9 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.9 N.D. N.D. N.D. N.D.
stress Paraquat dichloride 0.008 mg/ml -4.7 N.D. N.D. N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -4.4 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.2 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.1 N.D. N.D. N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -4.0 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -3.9 N.D. N.D. N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -3.9 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 10 -3.8 N.D. N.D. N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -3.8 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -3.7 N.D. N.D. N.D. N.D.
liquid stress 80% Methanol 3 mM; liquid stress -3.7 N.D. N.D. N.D. N.D.
soil soil sample 8; outgrowth in LB -3.7 N.D. N.D. N.D. N.D.
nitrogen source Adenine (N) -3.7 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.7 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -3.5 N.D. N.D. N.D. N.D.
liquid stress Fraxetin 2 mM; liquid stress -3.5 N.D. N.D. N.D. N.D.
phage JP1 MOI 1 -3.4 N.D. N.D. N.D. N.D.
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