Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22965	PS417_22970	PS417_22975	PS417_22980	PS417_22985
carbon source	NAG (C)	+0.5	-0.1	N.D.	-5.4	-3.8
carbon source	NAG (C)	+0.3	+0.1	N.D.	-3.4	-3.2
stress	Doxycycline hyclate 0.001 mg/ml	-0.4	-0.9	N.D.	-0.4	-0.6
carbon source	L-Valine (C)	-1.0	-0.4	N.D.	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.9	N.D.	-0.2	-0.0
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.5	+0.2	N.D.	-1.1	+0.1
phage	JP1 MOI 10	+0.3	-0.2	N.D.	-0.9	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.1	N.D.	-1.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-0.1	N.D.	-0.7	-0.3
carbon source	L-Valine (C)	-0.3	-0.5	N.D.	+0.8	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.6	+0.0	N.D.	+0.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.3	N.D.	-0.5	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.5	N.D.	-0.6	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.4	N.D.	-0.8	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	+0.0	N.D.	-0.9	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.6	+0.4	N.D.	-0.1	+0.8
solid stress	Fraxetin 3 mM; solid stress	-0.5	+0.0	N.D.	+0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.1	N.D.	+1.2	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.6	N.D.	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	N.D.	+0.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.0	-0.1	N.D.	+0.8	-0.6
solid stress	Fraxetin 3 mM; solid stress	-0.4	+0.4	N.D.	+0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.2	N.D.	+0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.4	N.D.	+0.7	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	+0.1	N.D.	-0.2	-0.2
phage	P. simiae OR1 MOI 0.1	+0.3	-0.2	N.D.	+0.7	+0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.4	-0.1	N.D.	+0.3	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.1	+0.0	N.D.	-0.0	+0.2
carbon source	D-Glucosamine Hydrochloride (C)	+0.4	-0.1	N.D.	+2.6	+2.8
carbon source	D-Glucosamine Hydrochloride (C)	+0.4	-0.4	N.D.	+2.8	+3.7