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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4481 and GFF4482 are separated by 199 nucleotides
GFF4482 and GFF4483 are separated by 96 nucleotides
GFF4483 and GFF4484 overlap by 1 nucleotides
GFF4484 and GFF4485 are separated by 288 nucleotides
GFF4481 - PTS system, mannose-specific IIA component (EC 2.7.1.69), at 266,593 to 267,042
GFF4481
GFF4482 - Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34), at 267,242 to 267,895
GFF4482
GFF4483 - FIG074102: hypothetical protein, at 267,992 to 268,360
GFF4483
GFF4484 - Transcriptional regulator, TetR family, at 268,360 to 268,941
GFF4484
GFF4485 - Transcriptional activator RamA, at 269,230 to 269,571
GFF4485
Group
Condition
GFF4481
GFF4482
GFF4483
GFF4484
GFF4485
phage
LB_plus_SM_buffer with P22_phage 15 MOI
-0.1
-0.6
-0.9
-0.9
-0.4
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-1.0
+0.4
-0.5
-0.1
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.4
-0.1
-0.4
-0.2
-0.3
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.1
-0.3
-0.5
-0.2
-0.1
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.0
-0.1
-0.2
-0.9
-0.0
phage
Br60_phage 15 MOI
-0.2
-0.5
-0.1
-0.2
-0.0
micoeukaryotes
C.elegans, mixed culture-1
+0.1
-0.2
+0.1
-0.7
-0.3
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
-0.7
+0.2
+0.0
-0.4
-0.1
phage
LB_plus_SM_buffer with phi19h1_phage 0.1875 MOI
+0.0
-0.2
-0.2
-0.2
-0.3
phage
LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
-0.4
+0.3
-0.5
-0.2
-0.1
phage
Br60_phage 15 MOI
-0.2
-0.5
-0.3
+0.2
-0.0
nophagecontrol
No phage control
+0.1
-0.7
-0.1
-0.0
+0.1
phage
LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
-0.3
-0.1
-0.3
-0.0
+0.3
phage
6F2_phage 15 MOI
+0.3
-0.5
-0.3
+0.1
-0.1
phage
6H2_phage 10 MOI; agar plate assay
+0.2
+0.4
-0.7
-0.0
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.2
+0.4
-0.5
+0.3
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.0
+0.3
+0.2
-0.7
+0.1
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.8
-0.5
-0.1
+0.3
-0.6
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
-0.3
-0.6
+0.4
+0.5
-0.1
phage
Ffm_phage 10 MOI; agar plate assay
-0.0
+0.3
+0.2
-0.9
+0.4
phage
phi19h1_phage 15 MOI
+0.2
-0.3
+0.1
+0.3
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
-0.1
-0.3
-0.1
+0.5
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-0.2
+0.1
-0.3
+0.6
-0.2
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.2
+0.3
-0.2
+0.3
+0.0
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
+0.5
-0.2
-0.4
+0.2
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
+0.4
-0.1
-0.2
+0.4
-0.1
phage
6F2_phage 15 MOI
+0.1
-0.1
+0.0
+0.7
-0.3
micoeukaryotes
Dictyostellum sp.mixed culture-2
+0.2
+0.4
+0.4
-0.2
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
-0.1
+0.2
+0.4
+0.7
+0.2
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
-0.2
+1.7
-0.8
-0.2
+1.1
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