Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22930	PS417_22935	PS417_22940	PS417_22945	PS417_22950
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-2.8	+0.0	-0.3	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-3.3	+0.0	-0.0	+0.3
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-2.6	-0.0	+0.0	-0.1
soil	soil sample 2; outgrowth in LB	N.D.	-0.3	-0.1	-2.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.4	+0.2	-0.2	-0.7
solid stress	Fraxetin 2 mM; solid stress	N.D.	-2.9	+0.2	+0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.7	+0.1	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.9	-0.1	+0.3	+0.3
liquid stress	Scopoletin 3 mM; liquid stress	N.D.	-1.8	+0.0	+0.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.4	-0.2	+0.5	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	-1.3	+0.5	-0.1	-0.3
solid stress	Scopoletin 3 mM; solid stress	N.D.	-1.3	+0.1	-0.4	+0.5
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-1.6	-0.2	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	+0.1	-0.7	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.4	-0.4	+0.9	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-0.1	+0.9	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.9	+0.2	-1.4	-0.2
liquid stress	Fraxetin 2 mM; liquid stress	N.D.	-1.5	+0.0	+0.8	+0.3
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.4	+0.0	+0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.5	-0.3	-1.1	-0.2
phage	P. simiae OR Antrim MOI 0.1	N.D.	-1.2	-0.2	+0.7	+0.7
solid stress	80% Methanol 3 mM; solid stress	N.D.	-1.1	+0.1	+0.9	+0.2
phage	P. simiae Grant Run MOI 0.1	N.D.	+0.6	-0.4	+0.6	-0.8
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	+1.0	+0.2	-0.9	-0.1
phage	P. simiae ORA MOI 1	N.D.	-0.7	-0.1	+0.8	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+1.6	+0.4	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.7	+0.1	+1.9	-0.1
stress	Cobalt chloride 0.16 mM	N.D.	+2.0	-0.2	+0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.3	-0.1	+1.0	+0.6
stress	Cisplatin 0.01 mg/ml	N.D.	+2.4	+0.3	-0.2	+0.3