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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF446 and GFF447 overlap by 4 nucleotides
GFF447 and GFF448 overlap by 4 nucleotides
GFF448 and GFF449 overlap by 17 nucleotides
GFF449 and GFF450 overlap by 16 nucleotides
GFF446 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 484,125 to 485,150
GFF446
GFF447 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 485,147 to 486,019
GFF447
GFF448 - Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 486,016 to 486,621
GFF448
GFF449 - Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11), at 486,605 to 488,026
GFF449
GFF450 - Outer membrane vitamin B12 receptor BtuB, at 488,011 to 489,927
GFF450
Group
Condition
GFF446
GFF447
GFF448
GFF449
GFF450
complex community
Community=guar; Passage=4
-1.3
+0.6
-2.5
+0.0
-1.2
complex community
Community=Locust bean gum; Passage=4
-0.8
+0.1
-2.1
-0.1
-1.4
complex community
Community=arabino-guar; Passage=4
-2.8
-0.0
-1.1
+0.4
-0.6
complex community
Community=arabino-guar; Passage=4
-0.9
-0.5
-2.5
+0.3
-0.6
complex community
Community=guar; Passage=4
-1.7
+0.7
-1.1
-0.2
-1.5
complex community
Community=guar; Passage=4
-1.8
+0.5
-1.2
+0.1
-1.2
complex community
Community=Locust bean gum; Passage=4
-1.2
-0.2
-1.0
+0.4
-1.2
complex community
Community=guar; Passage=4
-1.5
+0.0
-0.5
-0.1
-0.9
complex community
Community=Locust bean gum; Passage=4
-1.2
-0.1
-0.5
-0.1
-0.9
complex community
Community=arabino-guar; Passage=4
-1.5
+0.2
-0.6
-0.1
-0.8
complex community
Community=arabino-guar; Passage=4
-1.2
-0.1
-1.6
+0.8
-0.6
complex community
Community=Locust bean gum; Passage=4
-0.6
-0.1
-0.0
-0.2
-1.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.3
+0.2
-0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.2
-0.5
+0.4
+0.0
phage
phage_bap4
-0.5
+0.5
-0.6
+0.2
-0.0
complex community
Community=Kojac gum; Passage=4
-1.1
+0.4
+0.6
+0.2
-0.6
phage
phage_bap4
-0.3
+0.1
-0.3
-0.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.0
-0.5
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
-0.4
+0.3
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.3
+0.6
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.3
+0.3
+0.4
-0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.0
-0.3
+0.5
+0.1
phage
phage_bap4
-0.3
+0.1
+0.2
+0.3
+0.1
phage
phage_bap4
-0.4
+0.2
+0.7
-0.1
+0.0
no phage control
no phage control
-0.6
+0.3
+0.3
+0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
-0.2
+0.4
-0.0
phage
phage_bap4
-0.3
+0.6
-0.2
+0.3
+0.3
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.4
+0.0
+0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.1
+0.3
+0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
+0.2
-0.1
+0.5
+0.0
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