Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22915 and PS417_22920 are separated by 5 nucleotidesPS417_22920 and PS417_22925 are separated by 250 nucleotidesPS417_22925 and PS417_22930 are separated by 220 nucleotidesPS417_22930 and PS417_22935 are separated by 12 nucleotides PS417_22915: PS417_22915 - 16S rRNA processing protein RimM, at 4,964,841 to 4,965,377 _22915 PS417_22920: PS417_22920 - 30S ribosomal protein S16, at 4,965,383 to 4,965,634 _22920 PS417_22925: PS417_22925 - RNA-binding protein, at 4,965,885 to 4,967,261 _22925 PS417_22930: PS417_22930 - cytochrome C assembly protein, at 4,967,482 to 4,968,294 _22930 PS417_22935: PS417_22935 - hypothetical protein, at 4,968,307 to 4,969,545 _22935
Group Condition PS417_22915 PS417_22920 PS417_22925 PS417_22930 PS417_22935
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. N.D. -3.3
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. N.D. -2.9
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. N.D. -2.8
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. N.D. -2.6
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. N.D. N.D. -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.9
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. N.D. N.D. -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.7
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. N.D. -1.6
liquid stress Fraxetin 2 mM; liquid stress N.D. N.D. N.D. N.D. -1.5
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. N.D. -1.4
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.4
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. N.D. -1.4
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. N.D. N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.4
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. N.D. -1.3
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -1.3
solid stress 80% Methanol 3 mM; solid stress N.D. N.D. N.D. N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.3
solid stress Scopoletin 3 mM; solid stress N.D. N.D. N.D. N.D. -1.3
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. N.D. -1.2
solid stress Fraxetin 1 mM; solid stress N.D. N.D. N.D. N.D. -1.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.6
stress Cobalt chloride 0.16 mM N.D. N.D. N.D. N.D. +2.0
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. N.D. +2.4
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