Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22895 and PS417_22900 are separated by 143 nucleotidesPS417_22900 and PS417_22905 are separated by 82 nucleotidesPS417_22905 and PS417_22910 are separated by 45 nucleotidesPS417_22910 and PS417_22915 are separated by 2 nucleotides PS417_22895: PS417_22895 - tyrosine recombinase XerD, at 4,962,154 to 4,963,050 _22895 PS417_22900: PS417_22900 - cytochrome C oxidase subunit II, at 4,963,194 to 4,963,607 _22900 PS417_22905: PS417_22905 - 50S ribosomal protein L19, at 4,963,690 to 4,964,040 _22905 PS417_22910: PS417_22910 - tRNA (guanine-N1)-methyltransferase, at 4,964,086 to 4,964,838 _22910 PS417_22915: PS417_22915 - 16S rRNA processing protein RimM, at 4,964,841 to 4,965,377 _22915
Group Condition PS417_22895 PS417_22900 PS417_22905 PS417_22910 PS417_22915
stress Cisplatin 0.01 mg/ml -2.5 +0.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 +0.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.7 +0.2 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.2 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.6 +0.2 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.9 -0.5 N.D. N.D. N.D.
solid stress Scopoletin 1 mM; solid stress -1.1 -0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.0 -0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 +0.0 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 +0.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 +0.7 N.D. N.D. N.D.
solid stress 80% Methanol 2 mM; solid stress -1.2 +0.1 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 +0.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.2 N.D. N.D. N.D.
solid stress 80% Methanol 2 mM; solid stress -1.2 +0.3 N.D. N.D. N.D.
solid stress 80% Methanol 3 mM; solid stress -1.1 +0.2 N.D. N.D. N.D.
liquid stress Fraxetin 2 mM; liquid stress -1.1 +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 +0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.4 N.D. N.D. N.D.
phage P. simiae Grant Run MOI 10 -0.9 +0.7 N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% -0.8 +0.6 N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 -0.7 +0.8 N.D. N.D. N.D.
phage JP1 MOI 0.1 -0.6 +0.8 N.D. N.D. N.D.
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