Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22880 and PS417_22885 are separated by 67 nucleotidesPS417_22885 and PS417_22890 are separated by 129 nucleotidesPS417_22890 and PS417_22895 are separated by 141 nucleotidesPS417_22895 and PS417_22900 are separated by 143 nucleotides PS417_22880: PS417_22880 - threonine synthase, at 4,958,370 to 4,959,779 _22880 PS417_22885: PS417_22885 - homoserine dehydrogenase, at 4,959,847 to 4,961,151 _22885 PS417_22890: PS417_22890 - protein-disulfide isomerase, at 4,961,281 to 4,962,012 _22890 PS417_22895: PS417_22895 - tyrosine recombinase XerD, at 4,962,154 to 4,963,050 _22895 PS417_22900: PS417_22900 - cytochrome C oxidase subunit II, at 4,963,194 to 4,963,607 _22900
Group Condition PS417_22880 PS417_22885 PS417_22890 PS417_22895 PS417_22900
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. -2.5 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.1 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.7 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.6 +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. -0.9 -0.5
solid stress Scopoletin 1 mM; solid stress N.D. N.D. N.D. -1.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -1.0 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.0 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.3 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.8 +0.7
solid stress 80% Methanol 2 mM; solid stress N.D. N.D. N.D. -1.2 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.5 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.1 +0.2
solid stress 80% Methanol 2 mM; solid stress N.D. N.D. N.D. -1.2 +0.3
solid stress 80% Methanol 3 mM; solid stress N.D. N.D. N.D. -1.1 +0.2
liquid stress Fraxetin 2 mM; liquid stress N.D. N.D. N.D. -1.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.1 +0.4
phage P. simiae Grant Run MOI 10 N.D. N.D. N.D. -0.9 +0.7
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. -0.8 +0.6
phage P. simiae ORA MOI 0.1 N.D. N.D. N.D. -0.7 +0.8
phage JP1 MOI 0.1 N.D. N.D. N.D. -0.6 +0.8
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