Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22865 and PS417_22870 are separated by 16 nucleotidesPS417_22870 and PS417_22875 are separated by 170 nucleotidesPS417_22875 and PS417_22880 are separated by 232 nucleotidesPS417_22880 and PS417_22885 are separated by 67 nucleotides PS417_22865: PS417_22865 - CoA-transferase, at 4,955,609 to 4,956,802 _22865 PS417_22870: PS417_22870 - lipoprotein, at 4,956,819 to 4,957,682 _22870 PS417_22875: PS417_22875 - hypothetical protein, at 4,957,853 to 4,958,137 _22875 PS417_22880: PS417_22880 - threonine synthase, at 4,958,370 to 4,959,779 _22880 PS417_22885: PS417_22885 - homoserine dehydrogenase, at 4,959,847 to 4,961,151 _22885
Group Condition PS417_22865 PS417_22870 PS417_22875 PS417_22880 PS417_22885
phage P. simiae OR1 MOI 0.1 +0.1 -0.9 -1.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.3 -0.7 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.2 -0.4 N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.0 -1.3 -0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.6 -1.4 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.1 -1.8 -0.1 N.D. N.D.
phage P. simiae ORA MOI 10 +0.1 -0.3 -1.6 N.D. N.D.
phage P. simiae OR Antrim MOI 10 -0.2 -0.8 -0.8 N.D. N.D.
phage P. simiae OR Antrim MOI 1 +0.2 -0.8 -1.2 N.D. N.D.
phage JP1 MOI 1 +0.1 -1.1 -0.7 N.D. N.D.
carbon source L-Valine (C) +0.0 -1.8 +0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.3 -1.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.1 -1.4 N.D. N.D.
soil soil sample 4; outgrowth in LB +0.5 -0.1 -1.4 N.D. N.D.
phage JP1 MOI 10 +0.2 -1.6 +0.4 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 -0.8 -0.6 +0.5 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 +0.4 -1.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.5 -1.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +0.6 -1.5 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +1.1 -1.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.8 -0.2 N.D. N.D.
carbon source Carbon source D-Mannitol 2.5 mM -0.1 +0.8 -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.5 +1.0 N.D. N.D.
carbon source L-Valine (C) +0.6 -0.7 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +1.6 +0.4 N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.7 -0.4 +1.0 N.D. N.D.
phage P. simiae OR Antrim MOI 1 +0.2 +0.8 +0.8 N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.1 +1.6 +0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +2.2 +0.5 N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.1 +0.6 +4.8 N.D. N.D.
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