Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22850	PS417_22855	PS417_22860	PS417_22865	PS417_22870
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-7.8	-0.1	-0.1	-0.5	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-7.8	-0.8	-0.0	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-8.0	-0.4	-0.4	+0.5	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-5.6	+0.3	-0.0	+0.0	-0.9
supernatant control	Vogels_fungal_media 0.1X	-4.6	+0.6	-0.3	-0.2	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-4.1	-0.5	-0.3	+0.4	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-3.5	+0.1	+0.0	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-3.2	-0.1	-0.1	-0.2	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-4.4	-0.2	-0.1	-0.0	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-3.0	-0.2	+0.4	-0.2	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-3.8	+0.4	+0.1	+0.2	-0.2
soil	soil sample 5; outgrowth in LB	-1.5	-1.2	-0.1	-0.4	-0.2
seeds	Growth on radish seeds for 72 hours	-1.0	-0.4	+0.1	-0.1	-1.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.7	-0.5	-0.2	-0.3	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-3.0	-0.2	-0.3	-0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-3.2	-0.1	-0.1	-0.1	+0.4
supernatant control	Vogels_fungal_media 0.1X	-2.8	-0.2	+0.2	-0.3	-0.0
stress	Cisplatin 0.01 mg/ml	-0.1	-2.9	-0.1	-0.0	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-4.1	+0.6	-0.0	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-2.5	-0.1	+0.2	-0.1	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-2.6	-0.1	+0.1	+0.3	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.6	+0.1	+0.1	-0.4	+0.4
soil	soil sample 2; outgrowth in LB	-1.8	-0.6	-0.1	-0.1	+0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.8	+0.5	+0.0	-0.2	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	+0.0	+0.1	-0.1	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-2.0	+0.0	-0.2	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.2	+0.0	+0.1	+0.5	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.4	+0.7	+0.4	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-1.3	+0.0	-0.9	+1.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.4	+0.1	+0.3	+2.2