Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22835	PS417_22840	PS417_22845	PS417_22850	PS417_22855
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.4	-5.5	-8.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	-6.1	-7.8	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-6.3	-7.8	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.6	-3.9	-5.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-1.5	-3.9	-4.1	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	-3.6	-4.4	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.1	-2.9	-4.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-1.1	-3.4	-3.8	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-2.0	-2.7	-3.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-1.5	-2.8	-3.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.4	-2.7	-3.2	-0.1
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.6	-2.7	-4.6	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-1.7	-2.8	-2.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-1.0	-2.7	-3.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-1.3	-2.1	-2.2	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.8	-2.2	-2.4	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.2	-1.0	-2.6	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.2	-2.3	-2.8	+0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.1	-2.4	-3.0	-0.2
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.3	-2.3	-2.8	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.6	-0.9	-2.7	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.0	-0.6	-2.1	+0.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	-1.1	-1.6	-1.9	+0.0
soil	soil sample 6; outgrowth in LB	N.D.	-0.9	-0.9	-2.4	-0.2
soil	soil sample 5; outgrowth in LB	N.D.	-1.1	-0.6	-1.5	-1.2
soil	soil sample 2; outgrowth in LB	N.D.	-1.5	-0.5	-1.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.6	-0.1	+0.5	-2.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.1	-2.0	-2.2	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.1	-0.8	-1.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+6.6	+0.1	+0.1	-0.4