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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4456 and GFF4457 overlap by 4 nucleotides
GFF4457 and GFF4458 overlap by 35 nucleotides
GFF4458 and GFF4459 are separated by 21 nucleotides
GFF4459 and GFF4460 are separated by 15 nucleotides
GFF4456 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 97,598 to 98,470
GFF4456
GFF4457 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 98,467 to 99,210
GFF4457
GFF4458 - hypothetical protein, at 99,176 to 99,580
GFF4458
GFF4459 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 99,602 to 100,465
GFF4459
GFF4460 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 100,481 to 101,470
GFF4460
Group
Condition
GFF4456
GFF4457
GFF4458
GFF4459
GFF4460
complex community
Community=arabino-guar; Passage=4
-0.9
-1.6
-0.4
+0.0
+0.3
complex community
Community=Locust bean gum; Passage=4
-2.1
+0.4
+0.2
+0.5
-1.4
complex community
Community=Locust bean gum; Passage=4
-0.8
+0.1
+0.3
-0.9
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.9
-0.4
-0.0
-0.0
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
-0.5
+0.2
-0.0
-0.6
complex community
Community=Locust bean gum; Passage=4
-1.6
-0.6
-0.0
+0.3
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.8
-0.2
-0.0
+0.0
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.7
-0.1
-0.1
+0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.0
-0.0
+0.1
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.0
-0.0
+0.0
-0.1
-0.1
complex community
Community=Kojac gum; Passage=4
-2.0
+0.6
+0.1
+0.4
-0.3
phage
phage_bap4
-0.3
-0.7
-0.2
+0.3
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.6
+0.2
-0.0
-0.1
complex community
Community=arabino-guar; Passage=4
-1.0
-0.3
+0.0
-0.0
+0.4
complex community
Community=arabino-guar; Passage=4
-1.2
-0.0
-0.4
+0.6
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.8
-0.1
+0.0
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.9
-0.1
+0.2
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.1
+0.2
+0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.9
-0.1
+0.3
+0.4
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
-0.3
+0.3
+0.0
-0.1
no phage control
no phage control
-0.3
-0.2
-0.2
+0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.9
-0.0
+0.2
+0.1
+0.1
complex community
Community=guar; Passage=4
-0.6
+0.6
+0.1
+0.2
-0.5
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.4
+0.4
+0.2
-0.3
+0.1
phage
phage_bap4
-0.1
-0.5
-0.2
+0.4
+0.3
complex community
Community=arabino-guar; Passage=4
-1.0
+1.0
+0.1
+0.5
-0.3
complex community
Community=guar; Passage=4
-1.4
-0.0
+0.8
+0.5
+0.3
phage
phage_bap4
-0.3
+0.1
-0.1
+0.6
+0.1
complex community
Community=guar; Passage=4
-0.5
+0.6
+0.1
+0.1
+0.1
complex community
Community=guar; Passage=4
-1.1
+0.7
-0.2
+1.5
+0.2
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