Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4456 and GFF4457 overlap by 4 nucleotidesGFF4457 and GFF4458 overlap by 35 nucleotidesGFF4458 and GFF4459 are separated by 21 nucleotidesGFF4459 and GFF4460 are separated by 15 nucleotides GFF4456 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 97,598 to 98,470 GFF4456 GFF4457 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 98,467 to 99,210 GFF4457 GFF4458 - hypothetical protein, at 99,176 to 99,580 GFF4458 GFF4459 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 99,602 to 100,465 GFF4459 GFF4460 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 100,481 to 101,470 GFF4460
Group Condition GFF4456 GFF4457 GFF4458 GFF4459 GFF4460
complex community Community=arabino-guar; Passage=4 -0.9 -1.6 -0.4 +0.0 +0.3
complex community Community=Locust bean gum; Passage=4 -2.1 +0.4 +0.2 +0.5 -1.4
complex community Community=Locust bean gum; Passage=4 -0.8 +0.1 +0.3 -0.9 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL -0.9 -0.4 -0.0 -0.0 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.5 -0.5 +0.2 -0.0 -0.6
complex community Community=Locust bean gum; Passage=4 -1.6 -0.6 -0.0 +0.3 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.8 -0.2 -0.0 +0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.7 -0.1 -0.1 +0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -1.0 -0.0 +0.1 -0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -1.0 -0.0 +0.0 -0.1 -0.1
complex community Community=Kojac gum; Passage=4 -2.0 +0.6 +0.1 +0.4 -0.3
phage phage_bap4 -0.3 -0.7 -0.2 +0.3 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.6 -0.6 +0.2 -0.0 -0.1
complex community Community=arabino-guar; Passage=4 -1.0 -0.3 +0.0 -0.0 +0.4
complex community Community=arabino-guar; Passage=4 -1.2 -0.0 -0.4 +0.6 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.8 -0.1 +0.0 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.9 -0.1 +0.2 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -1.0 +0.1 +0.2 +0.1 -0.1
complex community Community=Locust bean gum; Passage=4 -0.9 -0.1 +0.3 +0.4 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.6 -0.3 +0.3 +0.0 -0.1
no phage control no phage control -0.3 -0.2 -0.2 +0.4 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.9 -0.0 +0.2 +0.1 +0.1
complex community Community=guar; Passage=4 -0.6 +0.6 +0.1 +0.2 -0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.4 +0.4 +0.2 -0.3 +0.1
phage phage_bap4 -0.1 -0.5 -0.2 +0.4 +0.3
complex community Community=arabino-guar; Passage=4 -1.0 +1.0 +0.1 +0.5 -0.3
complex community Community=guar; Passage=4 -1.4 -0.0 +0.8 +0.5 +0.3
phage phage_bap4 -0.3 +0.1 -0.1 +0.6 +0.1
complex community Community=guar; Passage=4 -0.5 +0.6 +0.1 +0.1 +0.1
complex community Community=guar; Passage=4 -1.1 +0.7 -0.2 +1.5 +0.2
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