Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_22770 and PS417_22775 are separated by 189 nucleotidesPS417_22775 and PS417_22780 overlap by 11 nucleotidesPS417_22780 and PS417_22785 are separated by 367 nucleotidesPS417_22785 and PS417_22790 are separated by 50 nucleotides PS417_22770: PS417_22770 - SAM-dependent methyltransferase, at 4,934,214 to 4,934,894 _22770 PS417_22775: PS417_22775 - histidine kinase, at 4,935,084 to 4,936,364 _22775 PS417_22780: PS417_22780 - XRE family transcriptional regulator, at 4,936,354 to 4,937,037 _22780 PS417_22785: PS417_22785 - molecular chaperone GroEL, at 4,937,405 to 4,939,051 _22785 PS417_22790: PS417_22790 - molecular chaperone GroES, at 4,939,102 to 4,939,398 _22790
Group Condition PS417_22770 PS417_22775 PS417_22780 PS417_22785 PS417_22790
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -4.9 -4.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -5.2 -3.4 N.D. N.D.
stress Aluminum chloride 4 mM -0.2 -4.9 -1.9 N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 -3.6 -3.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -3.9 -2.6 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -2.3 -4.1 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.6 -3.2 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -2.2 -4.2 N.D. N.D.
soil soil sample 2; outgrowth in LB -0.3 -2.8 -2.7 N.D. N.D.
soil soil sample 6; outgrowth in LB +0.4 -2.6 -3.4 N.D. N.D.
soil soil sample 5; outgrowth in LB -0.0 -2.2 -3.4 N.D. N.D.
soil soil sample 4; outgrowth in LB +0.3 -3.2 -2.6 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -2.8 -2.8 N.D. N.D.
root root sample 6; outgrowth in LB +0.6 -3.6 -2.4 N.D. N.D.
soil soil sample 3; outgrowth in LB +0.3 -2.3 -3.3 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -3.0 -1.9 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -2.3 -3.0 N.D. N.D.
soil soil sample 7; outgrowth in LB +0.1 -2.7 -2.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -2.3 -2.6 N.D. N.D.
soil soil sample 8; outgrowth in LB -0.4 -1.6 -2.5 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -3.2 -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.8 -2.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -2.1 -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.7 -1.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -1.6 -1.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.8 -2.3 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 -0.2 -2.6 N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.6 -1.1 -1.8 N.D. N.D.
phage P. simiae OR1 MOI 0.1 +0.4 -0.7 -1.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -2.2 -0.2 N.D. N.D.
remove
PS417_22770
plot		 remove
PS417_22775
plot		 remove
PS417_22780		 remove
PS417_22785
plot		 remove
PS417_22790
plot