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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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500 nt
GFF4438 and GFF4439 are separated by 57 nucleotides
GFF4439 and GFF4440 are separated by 55 nucleotides
GFF4440 and GFF4441 are separated by 15 nucleotides
GFF4441 and GFF4442 are separated by 2 nucleotides
GFF4438 - Sugar kinases, ribokinase family, at 77,842 to 78,744
GFF4438
GFF4439 - Probable transmembrane protein, at 78,802 to 80,199
GFF4439
GFF4440 - Ribosomal protein L11 methyltransferase, at 80,255 to 81,142
GFF4440
GFF4441 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 81,158 to 82,507
GFF4441
GFF4442 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 82,510 to 82,977
GFF4442
Group
Condition
GFF4438
GFF4439
GFF4440
GFF4441
GFF4442
complex community
Community=arabino-guar; Passage=4
-1.3
-0.3
-0.3
N.D.
N.D.
complex community
Community=guar; Passage=4
-1.4
-0.1
-0.4
N.D.
N.D.
complex community
Community=guar; Passage=4
-1.2
-0.4
-0.2
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.8
-0.4
-0.2
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.6
-0.6
-0.2
N.D.
N.D.
complex community
Community=guar; Passage=4
-1.5
+0.3
-0.1
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
-1.4
+0.1
-0.0
N.D.
N.D.
complex community
Community=Kojac gum; Passage=4
-0.8
-0.5
-0.1
N.D.
N.D.
complex community
Community=guar; Passage=4
-0.9
-0.4
-0.0
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
-1.0
+0.0
-0.1
N.D.
N.D.
phage
phage_bap4
-0.7
-0.0
-0.2
N.D.
N.D.
phage
phage_bap4
-0.7
-0.0
-0.1
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.6
-0.2
+0.1
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
-0.0
-0.1
N.D.
N.D.
no phage control
no phage control
-0.6
-0.0
-0.1
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.7
-0.0
+0.1
N.D.
N.D.
no phage control
no phage control
-0.5
-0.2
+0.1
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.0
-0.0
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.1
+0.2
N.D.
N.D.
phage
phage_bap4
-0.4
-0.2
+0.1
N.D.
N.D.
complex community
Community=Kojac gum; Passage=1
-0.8
-0.0
+0.4
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.5
-0.0
+0.1
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-0.1
+0.2
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.3
+0.3
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.2
+0.2
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
-0.6
-0.3
+0.7
N.D.
N.D.
phage
phage_bap4
-0.2
+0.8
-0.2
N.D.
N.D.
phage
phage_bap4
-0.1
+0.9
-0.2
N.D.
N.D.
phage
phage_bap4
-0.2
+0.9
+0.0
N.D.
N.D.
phage
phage_bap4
+0.1
+0.8
+0.0
N.D.
N.D.
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