Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22695	PS417_22700	PS417_22705	PS417_22710	PS417_22715
solid stress	Fraxetin 3 mM; solid stress	-0.5	-1.5	+0.8	-1.2	-1.3
stress	methylglyoxal 0.032 vol%	-0.3	-0.3	-1.7	+0.3	-1.5
solid stress	Fraxetin 3 mM; solid stress	-0.5	-1.4	+0.2	-0.7	-0.6
carbon source	NAG (C)	-2.5	+0.1	-0.5	-0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	-3.0	+0.2	+0.4
carbon source	D-Fructose (C)	-1.7	+0.1	-0.5	-0.1	-0.6
solid stress	Fraxetin 2 mM; solid stress	-0.3	-1.0	-0.3	-0.5	-0.8
carbon source	D-Mannose (C)	-1.8	-0.5	-0.2	-0.1	-0.2
solid stress	Fraxetin 3 mM; solid stress	-0.4	-1.0	+0.3	-0.9	-0.6
carbon source	D-Trehalose (C)	-2.7	+0.2	+0.0	+0.0	-0.0
phage	P. simiae OR Antrim MOI 10	-0.5	+0.2	-1.3	+0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	-0.5	+0.5	+0.1	+0.0
solid stress	Fraxetin 2 mM; solid stress	-0.2	-1.2	+0.8	-0.5	-0.8
carbon source	D-Fructose (C)	-2.0	+0.1	+0.3	-0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.7	+0.5	-0.3	-1.0
carbon source	Glycerol (C)	-2.1	-0.1	+0.7	-0.1	+0.0
carbon source	D-Trehalose (C)	-2.3	+0.2	+0.6	+0.0	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.6	-0.9	-0.1	+0.7
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	-1.2	+0.9	+0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+0.1	+1.2	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	-0.4	-0.3	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+1.8	+0.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.6	+1.2	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.5	+1.1	-0.0	+1.4
root	root sample 6; outgrowth in LB	+0.6	+0.9	+0.6	+0.7	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+1.8	-0.4	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.3	+1.5	+0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.3	+1.2	+0.2	+1.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.9	+2.3	-0.2	+0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.1	+5.5	-0.3	+0.9	+3.7