Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF4423 and GFF4424 overlap by 4 nucleotidesGFF4424 and GFF4425 are separated by 267 nucleotidesGFF4425 and GFF4426 are separated by 279 nucleotidesGFF4426 and GFF4427 overlap by 4 nucleotides GFF4423 - Conjugative transfer protein TrbI, at 59,296 to 60,564 GFF4423 GFF4424 - FIG00956188: hypothetical protein, at 60,561 to 60,806 GFF4424 GFF4425 - Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.5.8), at 61,074 to 63,515 GFF4425 GFF4426 - Homolog of eukaryotic DNA ligase III, at 63,795 to 64,691 GFF4426 GFF4427 - hypothetical protein, at 64,688 to 65,827 GFF4427
Group Condition GFF4423 GFF4424 GFF4425 GFF4426 GFF4427
phage phage_bap4 -0.1 -0.1 -0.1 -0.1 -0.2
phage phage_bap4 -0.0 -0.0 -0.0 -0.1 -0.3
phage phage_bap4 -0.0 -0.1 -0.0 -0.1 -0.1
phage phage_bap4 -0.1 +0.1 -0.1 -0.1 -0.1
complex community Community=guar; Passage=4 +0.1 +0.1 +0.0 +0.0 -0.3
complex community Community=Locust bean gum; Passage=4 -0.2 -0.1 +0.1 +0.0 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.1 +0.1 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 -0.1 +0.1 +0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.1 -0.0 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.2 -0.0 +0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.1 -0.0 -0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.1 +0.1 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.0 +0.0 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.1 +0.0 +0.1 +0.1
complex community Community=guar; Passage=4 +0.1 -0.1 +0.1 -0.1 +0.3
no phage control no phage control +0.1 -0.0 +0.1 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.2 -0.0 +0.0 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.1 -0.0 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 +0.1 -0.0 +0.1 +0.0
complex community Community=Locust bean gum; Passage=4 +0.1 +0.4 +0.0 +0.0 -0.3
complex community Community=arabino-guar; Passage=4 -0.1 -0.0 +0.0 +0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.2 +0.1 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.2 +0.1 +0.0 +0.0
complex community Community=Locust bean gum; Passage=4 +0.0 +0.1 +0.0 +0.2 +0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.1 +0.1 +0.2 +0.1
complex community Community=arabino-guar; Passage=4 +0.2 +0.2 +0.1 +0.0 +0.0
complex community Community=Kojac gum; Passage=4 +0.5 -0.1 +0.0 +0.1 +0.1
complex community Community=guar; Passage=4 -0.1 +0.4 +0.1 +0.2 +0.1
complex community Community=guar; Passage=4 +0.2 -0.2 -0.0 +0.2 +0.5
complex community Community=Locust bean gum; Passage=4 +0.1 +0.3 +0.2 +0.1 +0.4
remove
GFF4423
plot		 remove
GFF4424
plot		 remove
GFF4425		 remove
GFF4426
plot		 remove
GFF4427
plot