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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 16 experiments (either direction), sorted by average fitness
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500 nt
GFF4415 and GFF4416 are separated by 376 nucleotides
GFF4416 and GFF4417 overlap by 4 nucleotides
GFF4417 and GFF4418 are separated by 100 nucleotides
GFF4418 and GFF4419 overlap by 4 nucleotides
GFF4415 - Integration host factor beta subunit, at 4,412,724 to 4,413,017
GFF4415
GFF4416 - Transcriptional regulator, ArsR family, at 4,413,394 to 4,413,768
GFF4416
GFF4417 - Alkyl hydroperoxide reductase subunit C-like protein, at 4,413,765 to 4,414,388
GFF4417
GFF4418 - MBL-fold metallo-hydrolase superfamily, at 4,414,489 to 4,415,406
GFF4418
GFF4419 - Putative transmembrane protein, at 4,415,403 to 4,415,840
GFF4419
Group
Condition
GFF4415
GFF4416
GFF4417
GFF4418
GFF4419
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.4
+0.0
-0.0
+0.0
-0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
-0.2
-0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.0
-0.3
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.3
+0.1
+0.1
-0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.1
+0.2
+0.1
-0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.4
-0.1
+0.3
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.0
-0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.2
-0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.3
+0.2
+0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
+0.3
-0.0
+0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
-0.0
+0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.2
-0.1
+0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.1
-0.0
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
+0.1
+0.2
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
-0.0
+0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.0
+0.4
+0.0
+0.1
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