Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4410 and GFF4411 overlap by 4 nucleotidesGFF4411 and GFF4412 are separated by 234 nucleotidesGFF4412 and GFF4413 overlap by 4 nucleotidesGFF4413 and GFF4414 overlap by 4 nucleotides GFF4410 - Transcriptional regulator, LysR family, at 46,993 to 47,937 GFF4410 GFF4411 - Conjugative transfer protein TrbK, at 47,934 to 48,212 GFF4411 GFF4412 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 48,447 to 50,480 GFF4412 GFF4413 - CopG domain-containing protein, at 50,477 to 50,953 GFF4413 GFF4414 - Conjugative transfer protein TrbB, at 50,950 to 52,014 GFF4414
Group Condition GFF4410 GFF4411 GFF4412 GFF4413 GFF4414
complex community Community=guar; Passage=4 +0.2 +0.0 -0.1 -0.0 -1.8
complex community Community=guar; Passage=4 -0.0 +0.2 -0.2 +0.1 -1.7
complex community Community=guar; Passage=4 +0.2 -0.3 -0.2 -0.4 +0.0
complex community Community=Locust bean gum; Passage=4 -0.0 +0.1 -0.2 -0.5 -0.2
complex community Community=arabino-guar; Passage=4 +0.0 -0.2 -0.2 -0.3 -0.1
complex community Community=Kojac gum; Passage=4 +0.2 +0.5 +0.1 -0.5 -1.0
complex community Community=Locust bean gum; Passage=4 -0.0 -0.3 -0.4 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.1 -0.1 -0.1 -0.3
phage phage_bap4 -0.1 +0.1 -0.0 -0.3 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.0 -0.1 +0.1 +0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 -0.2 -0.1 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.1 -0.1 -0.2 +0.2
phage phage_bap4 -0.0 +0.2 -0.1 +0.1 -0.4
complex community Community=arabino-guar; Passage=4 +0.1 -0.1 -0.1 -0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.2 -0.0 -0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.2 +0.0 -0.1 +0.3
phage phage_bap4 +0.0 -0.0 -0.1 -0.1 +0.3
complex community Community=Locust bean gum; Passage=1 -0.0 +0.1 +0.0 -0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.2 -0.1 -0.0 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 -0.0 -0.0 -0.2 +0.4
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.1 +0.0 -0.1 +0.5
complex community Community=guar; Passage=4 +0.1 +0.1 -0.2 -0.6 +1.1
complex community Community=Locust bean gum; Passage=4 -0.0 +0.1 -0.1 +0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.1 -0.1 -0.3 +0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 +0.2 -0.1 +0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 +0.1 -0.1 -0.1 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 +0.1 +0.0 -0.1 +0.4
complex community Community=Locust bean gum; Passage=4 +0.2 +0.4 -0.3 +0.3 -0.0
phage phage_bap4 -0.0 +0.2 +0.1 +0.0 +0.5
complex community Community=arabino-guar; Passage=4 -0.1 +0.4 -0.3 +0.0 +1.0
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