Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF4409 and GFF4410 are separated by 681 nucleotidesGFF4410 and GFF4411 overlap by 4 nucleotidesGFF4411 and GFF4412 are separated by 234 nucleotidesGFF4412 and GFF4413 overlap by 4 nucleotides GFF4409 - Aldehyde dehydrogenase (EC 1.2.1.3), at 44,572 to 46,311 GFF4409 GFF4410 - Transcriptional regulator, LysR family, at 46,993 to 47,937 GFF4410 GFF4411 - Conjugative transfer protein TrbK, at 47,934 to 48,212 GFF4411 GFF4412 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 48,447 to 50,480 GFF4412 GFF4413 - CopG domain-containing protein, at 50,477 to 50,953 GFF4413
Group Condition GFF4409 GFF4410 GFF4411 GFF4412 GFF4413
complex community Community=guar; Passage=4 -0.0 +0.2 -0.3 -0.2 -0.4
complex community Community=guar; Passage=4 +0.1 +0.1 +0.1 -0.2 -0.6
complex community Community=Locust bean gum; Passage=4 +0.2 -0.0 -0.3 -0.4 -0.0
complex community Community=arabino-guar; Passage=4 +0.1 +0.0 -0.2 -0.2 -0.3
complex community Community=Locust bean gum; Passage=4 +0.1 -0.0 +0.1 -0.2 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 -0.0 -0.1 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.0 -0.1 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.0 -0.2 -0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.1 -0.2 -0.0 -0.3
phage phage_bap4 -0.1 -0.1 +0.1 -0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 -0.0 -0.1 -0.0 -0.2
complex community Community=arabino-guar; Passage=4 +0.1 +0.1 -0.1 -0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.0 -0.0 -0.2 +0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.0 -0.2 -0.1 -0.0
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.1 +0.1 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 -0.0 -0.2 +0.1 -0.0
complex community Community=Locust bean gum; Passage=1 +0.0 -0.0 +0.1 +0.0 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 +0.0 -0.2 +0.1 -0.1
complex community Community=guar; Passage=4 -0.0 -0.0 +0.2 -0.2 +0.1
complex community Community=arabino-guar; Passage=4 +0.1 -0.0 +0.1 -0.1 -0.2
complex community Community=arabino-guar; Passage=4 -0.0 -0.1 +0.4 -0.3 +0.0
phage phage_bap4 -0.0 -0.0 +0.2 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.0 +0.2 -0.1 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 +0.0 +0.2 +0.0 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.0 +0.2 -0.1 +0.2
complex community Community=Kojac gum; Passage=4 +0.0 +0.2 +0.5 +0.1 -0.5
complex community Community=Locust bean gum; Passage=4 +0.1 -0.0 +0.1 -0.1 +0.3
phage phage_bap4 +0.0 -0.0 +0.2 +0.1 +0.0
phage phage_bap4 +0.0 +0.0 +0.1 +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 -0.0 +0.2 +0.4 -0.3 +0.3
remove
GFF4409
plot		 remove
GFF4410
plot		 remove
GFF4411		 remove
GFF4412
plot		 remove
GFF4413
plot